Uses of Interface
org.openscience.cdk.io.IChemObjectReader
-
Packages that use IChemObjectReader Package Description org.openscience.cdk.io org.openscience.cdk.io.iterator org.openscience.cdk.io.random org.openscience.cdk.io.rdf -
-
Uses of IChemObjectReader in org.openscience.cdk.io
Subinterfaces of IChemObjectReader in org.openscience.cdk.io Modifier and Type Interface Description interface
ISimpleChemObjectReader
This class is the interface that all IO readers should implement.Classes in org.openscience.cdk.io that implement IChemObjectReader Modifier and Type Class Description class
CIFReader
This is not a reader for the CIF and mmCIF crystallographic formats.class
CMLReader
Reads a molecule in CML 1.x and 2.0 format.class
CrystClustReader
class
CTXReader
Reader that extracts information from the IDENT, NAME, ATOMS and BONDS blocks in CTX files.class
DefaultChemObjectReader
Abstract class that ChemObjectReader's can implement to have it take care of basic stuff, like managing the ReaderListeners.class
GamessReader
A reader for GAMESS log file.class
Gaussian03Reader
A reader for Gaussian03 output.class
Gaussian98Reader
A reader for Gaussian98 output.class
GhemicalMMReader
Reads Ghemical ( http://www.uku.fi/~thassine/ghemical/) molecular mechanics (*.mm1gp) files.class
HINReader
Reads an object from HIN formated input.class
INChIPlainTextReader
Reads the content of a IUPAC/NIST Chemical Identifier (INChI) plain text document.class
INChIReader
Reads the content of a IUPAC/NIST Chemical Identifier (INChI) document.class
MDLReader
Deprecated.This reader is only for molfiles without a version tag, typically the most common molfile now encountered is V2000 and theMDLV2000Reader
should be used instead.class
MDLRXNReader
Deprecated.Use V2000 or V3000class
MDLRXNV2000Reader
Reads a molecule from an MDL RXN file [Dalby, A. et. al.. Journal of Chemical Information and Computer Sciences. 1992. 32].class
MDLRXNV3000Reader
Class that implements the new MDL mol format introduced in August 2002.class
MDLV2000Reader
Reads content from MDL molfiles and SD files.class
MDLV3000Reader
Class that implements the MDL mol V3000 format.class
Mol2Reader
Reads a molecule from an Mol2 file, such as written by Sybyl.class
Mopac7Reader
Reads MOPAC output, extracts several electronic parameters and assigns them as a molecule properties.class
MoSSOutputReader
Reader for MoSS output files [Unknown BibTeXML type: BOR2002] which present the results of a substructure mining study.class
PCCompoundASNReader
Reads an object from ASN formated input for PubChem Compound entries.class
PCCompoundXMLReader
Reads an object from ASN.1 XML formated input for PubChem Compound entries.class
PCSubstanceXMLReader
Reads an object from ASN formated input for PubChem Compound entries.class
PDBReader
Reads the contents of a PDBFile.class
PMPReader
Reads an frames from a PMP formated input.class
RGroupQueryReader
A reader for Symyx' Rgroup files (RGFiles).class
ShelXReader
A reader for ShelX output (RES) files.class
SMILESReader
This Reader reads files which has one SMILES string on each line, where the format is given as below:class
VASPReader
Read output files generated with the VASP software.class
XYZReader
Reads an object from XYZ formated input.class
ZMatrixReader
It reads Z matrices like in Gaussian input files. -
Uses of IChemObjectReader in org.openscience.cdk.io.iterator
Subinterfaces of IChemObjectReader in org.openscience.cdk.io.iterator Modifier and Type Interface Description interface
IIteratingChemObjectReader<T extends IChemObject>
Interface for an iterating molecule reader.Classes in org.openscience.cdk.io.iterator that implement IChemObjectReader Modifier and Type Class Description class
DefaultIteratingChemObjectReader<T extends IChemObject>
Abstract class that IteratingChemObjectReader's can implement to have it take care of basic stuff, like managing the ReaderListeners.class
IteratingPCCompoundASNReader
Iterating PubChem PCCompound ASN reader.class
IteratingPCCompoundXMLReader
Iterating PubChem PCCompound ASN.1 XML reader.class
IteratingPCSubstancesXMLReader
Iterating PubChem PC-Substances ASN.1 XML reader.class
IteratingSDFReader
Iterating MDL SDF reader.class
IteratingSMILESReader
Iterating SMILES file reader. -
Uses of IChemObjectReader in org.openscience.cdk.io.random
Methods in org.openscience.cdk.io.random that return IChemObjectReader Modifier and Type Method Description IChemObjectReader
RandomAccessReader. getChemObjectReader()
-
Uses of IChemObjectReader in org.openscience.cdk.io.rdf
Classes in org.openscience.cdk.io.rdf that implement IChemObjectReader Modifier and Type Class Description class
CDKOWLReader
Reads content from a CDK OWL serialization.
-