Class MDLReader

    • Constructor Detail

      • MDLReader

        public MDLReader()
        Deprecated.
      • MDLReader

        public MDLReader​(InputStream in)
        Deprecated.
        Constructs a new MDLReader that can read Molecule from a given InputStream.
        Parameters:
        in - The InputStream to read from
      • MDLReader

        public MDLReader​(Reader in)
        Deprecated.
        Constructs a new MDLReader that can read Molecule from a given Reader.
        Parameters:
        in - The Reader to read from
    • Method Detail

      • setReader

        public void setReader​(Reader input)
                       throws CDKException
        Deprecated.
        Description copied from interface: IChemObjectReader
        Sets the Reader from which this ChemObjectReader should read the contents.
        Throws:
        CDKException
      • accepts

        public boolean accepts​(Class<? extends IChemObject> classObject)
        Deprecated.
        Description copied from interface: IChemObjectIO
        Returns whether the given IChemObject can be read or written.
        Parameters:
        classObject - IChemObject of which is tested if it can be handled.
        Returns:
        true, if the IChemObject can be handled.
      • read

        public <T extends IChemObject> T read​(T object)
                                       throws CDKException
        Deprecated.
        Takes an object which subclasses IChemObject, e.g. Molecule, and will read this (from file, database, internet etc). If the specific implementation does not support a specific IChemObject it will throw an Exception.
        Parameters:
        object - The object that subclasses IChemObject
        Returns:
        The IChemObject read
        Throws:
        CDKException
      • close

        public void close()
                   throws IOException
        Deprecated.
        Description copied from interface: IChemObjectIO
        Closes this IChemObjectIO's resources.
        Throws:
        IOException - when the wrapper IO class cannot be closed.
      • customizeJob

        public void customizeJob()
        Deprecated.