Package org.openscience.cdk.io.iterator
Class IteratingPCSubstancesXMLReader
java.lang.Object
org.openscience.cdk.io.ChemObjectIO
org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader<IChemModel>
org.openscience.cdk.io.iterator.IteratingPCSubstancesXMLReader
- All Implemented Interfaces:
Closeable
,AutoCloseable
,Iterator<IChemModel>
,IChemObjectIO
,IChemObjectReader
,IIteratingChemObjectReader<IChemModel>
Iterating PubChem PC-Substances ASN.1 XML reader.
- Author:
- Egon Willighagen <egonw@users.sf.net>
- Source code:
- main
- Belongs to CDK module:
- io
- Keywords:
- file format, ASN, PubChem
- Created on:
- 2008-05-05
-
Nested Class Summary
Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader
IChemObjectReader.Mode
-
Field Summary
Fields inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader
errorHandler, mode
-
Constructor Summary
ConstructorsConstructorDescriptionIteratingPCSubstancesXMLReader
(InputStream in, IChemObjectBuilder builder) Constructs a new IteratingPCSubstancesXMLReader that can read Molecule from a given InputStream and IChemObjectBuilder.IteratingPCSubstancesXMLReader
(Reader in, IChemObjectBuilder builder) Constructs a new IteratingPCSubstancesXMLReader that can read Molecule from a given Reader and IChemObjectBuilder. -
Method Summary
Modifier and TypeMethodDescriptionvoid
close()
Closes this IChemObjectIO's resources.Returns theIResourceFormat
class for this IO class.boolean
hasNext()
next()
void
remove()
File IO generally does not support removing of entries.void
setReader
(InputStream reader) Sets the InputStream from which this ChemObjectReader should read the contents.void
Sets the Reader from which this ChemObjectReader should read the contents.Methods inherited from class org.openscience.cdk.io.iterator.DefaultIteratingChemObjectReader
accepts, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode
Methods inherited from class org.openscience.cdk.io.ChemObjectIO
addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.openscience.cdk.io.IChemObjectIO
addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
Methods inherited from interface java.util.Iterator
forEachRemaining
-
Constructor Details
-
IteratingPCSubstancesXMLReader
public IteratingPCSubstancesXMLReader(Reader in, IChemObjectBuilder builder) throws IOException, XMLStreamException Constructs a new IteratingPCSubstancesXMLReader that can read Molecule from a given Reader and IChemObjectBuilder.- Parameters:
in
- The input streambuilder
- The builder- Throws:
IOException
- if there is error in getting theIsotopeFactory
XMLStreamException
- an error in reading XML
-
IteratingPCSubstancesXMLReader
Constructs a new IteratingPCSubstancesXMLReader that can read Molecule from a given InputStream and IChemObjectBuilder.- Parameters:
in
- The input streambuilder
- The builder. In general, useDefaultChemObjectBuilder
- Throws:
Exception
- if there is a problem creating an InputStreamReader
-
-
Method Details
-
getFormat
Description copied from interface:IChemObjectIO
Returns theIResourceFormat
class for this IO class. -
hasNext
public boolean hasNext() -
next
-
close
Description copied from interface:IChemObjectIO
Closes this IChemObjectIO's resources.- Throws:
IOException
- when the wrapper IO class cannot be closed.
-
remove
public void remove()Description copied from class:DefaultIteratingChemObjectReader
File IO generally does not support removing of entries.- Specified by:
remove
in interfaceIterator<IChemModel>
- Overrides:
remove
in classDefaultIteratingChemObjectReader<IChemModel>
-
setReader
Description copied from interface:IChemObjectReader
Sets the Reader from which this ChemObjectReader should read the contents.- Throws:
CDKException
-
setReader
Description copied from interface:IChemObjectReader
Sets the InputStream from which this ChemObjectReader should read the contents.- Throws:
CDKException
-