Package org.openscience.cdk.io
Class INChIPlainTextReader
java.lang.Object
org.openscience.cdk.io.ChemObjectIO
org.openscience.cdk.io.DefaultChemObjectReader
org.openscience.cdk.io.INChIPlainTextReader
- All Implemented Interfaces:
Closeable
,AutoCloseable
,IChemObjectIO
,IChemObjectReader
,ISimpleChemObjectReader
Reads the content of a IUPAC/NIST Chemical Identifier (INChI) plain text
document. This reader parses output generated with INChI 1.12beta like:
Input_File: "E:\Program Files\INChI\inchi-samples\Figure04.mol" Structure: 1 INChI=1.12Beta/C6H6/c1-2-4-6-5-3-1/h1-6H AuxInfo=1.12Beta/0/N:1,2,3,4,5,6/E:(1,2,3,4,5,6)/rA:6CCCCCC/rB:s1;d1;d2;s3;s4d5;/rC:5.6378,-4.0013,0;5.6378,-5.3313,0;4.4859,-3.3363,0;4.4859,-5.9963,0;3.3341,-4.0013,0;3.3341,-5.3313,0;
- Author:
- Egon Willighagen <egonw@sci.kun.nl>
- See Also:
- Source code:
- main
- Belongs to CDK module:
- extra
- Keywords:
- file format, INChI, chemical identifier
- Created on:
- 2004-08-01
- Requires:
- java1.4+
-
Nested Class Summary
Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader
IChemObjectReader.Mode
-
Field Summary
Fields inherited from class org.openscience.cdk.io.DefaultChemObjectReader
errorHandler, mode
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Constructor Summary
ConstructorsConstructorDescriptionINChIPlainTextReader
(InputStream input) INChIPlainTextReader
(Reader input) Construct a INChI reader from a Reader object. -
Method Summary
Modifier and TypeMethodDescriptionboolean
accepts
(Class<? extends IChemObject> classObject) Returns whether the givenIChemObject
can be read or written.void
close()
Closes this IChemObjectIO's resources.Returns theIResourceFormat
class for this IO class.<T extends IChemObject>
Tread
(T object) Reads a IChemObject of type object from input.void
setReader
(InputStream input) Sets the InputStream from which this ChemObjectReader should read the contents.void
Sets the Reader from which this ChemObjectReader should read the contents.Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader
fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode
Methods inherited from class org.openscience.cdk.io.ChemObjectIO
addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.openscience.cdk.io.IChemObjectIO
addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
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Constructor Details
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INChIPlainTextReader
Construct a INChI reader from a Reader object.- Parameters:
input
- the Reader with the content
-
INChIPlainTextReader
-
INChIPlainTextReader
public INChIPlainTextReader()
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Method Details
-
getFormat
Description copied from interface:IChemObjectIO
Returns theIResourceFormat
class for this IO class. -
setReader
Description copied from interface:IChemObjectReader
Sets the Reader from which this ChemObjectReader should read the contents. -
setReader
Description copied from interface:IChemObjectReader
Sets the InputStream from which this ChemObjectReader should read the contents.- Throws:
CDKException
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accepts
Description copied from interface:IChemObjectIO
Returns whether the givenIChemObject
can be read or written.- Parameters:
classObject
-IChemObject
of which is tested if it can be handled.- Returns:
- true, if the
IChemObject
can be handled.
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read
Reads a IChemObject of type object from input. Supported types are: ChemFile.- Parameters:
object
- type of requested IChemObject- Returns:
- the content in a ChemFile object
- Throws:
CDKException
- it is thrown if the type of information is not available from the input
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close
Description copied from interface:IChemObjectIO
Closes this IChemObjectIO's resources.- Throws:
IOException
- when the wrapper IO class cannot be closed.
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