Package org.openscience.cdk.io.rdf

Class CDKOWLReader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.DefaultChemObjectReader

org.openscience.cdk.io.rdf.CDKOWLReader

All Implemented Interfaces:

Closeable, AutoCloseable, IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

public class CDKOWLReader
extends DefaultChemObjectReader

Reads content from a CDK OWL serialization.

Source code:

main

Belongs to CDK module:

iordf

Keywords:

file format, OWL

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

IChemObjectReader.Mode

Field Summary

Fields inherited from class org.openscience.cdk.io.DefaultChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor	Description
CDKOWLReader()	Creates a new CDKOWLReader with an undefined input.
CDKOWLReader(Reader input)	Creates a new CDKOWLReader sending output to the given Writer.

Method Summary

Modifier and Type	Method	Description
boolean	accepts(Class<? extends IChemObject> classObject)	Returns whether the given IChemObject can be read or written.
void	close()	Closes this IChemObjectIO's resources.
IResourceFormat	getFormat()	Returns the IResourceFormat for this reader.
<T extends IChemObject> T	read(T object)	Reads an IChemObject of type "object" from input.
void	setReader(InputStream input)	Sets the InputStream from which this ChemObjectReader should read the contents.
void	setReader(Reader reader)	Deprecated.

Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader

fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Constructor Detail

CDKOWLReader

public CDKOWLReader(Reader input)

Creates a new CDKOWLReader sending output to the given Writer.

Parameters:

input - Reader from which is OWL input is taken.

CDKOWLReader

public CDKOWLReader()

Creates a new CDKOWLReader with an undefined input.

Method Detail

getFormat

public IResourceFormat getFormat()

Returns the IResourceFormat for this reader.

Returns:

returns a CDKOWLFormat.

setReader

public void setReader(Reader reader)
               throws CDKException

Deprecated.

This method must not be used; XML reading requires the use of an InputStream. Use setReader(InputStream) instead.

Parameters:

reader - reader to which should be written.

Throws:

CDKException

setReader

public void setReader(InputStream input)
               throws CDKException

Sets the InputStream from which this ChemObjectReader should read the contents.

Throws:

CDKException

accepts

public boolean accepts(Class<? extends IChemObject> classObject)

Returns whether the given IChemObject can be read or written.

Parameters:

classObject - IChemObject of which is tested if it can be handled.

Returns:

true, if the IChemObject can be handled.

read

public <T extends IChemObject> T read(T object)
                               throws CDKException

Reads an IChemObject of type "object" from input. The constructor of the actual implementation may take a Reader as input to get a very flexible reader that can read from string, files, etc.

Parameters:

object - the type of object to return

Returns:

returns an object of that contains the content (or part) of the input content

Throws:

CDKException - it is thrown if the type of information is not available from the input

close

public void close()
           throws IOException

Closes this IChemObjectIO's resources.

Throws:

IOException - when the wrapper IO class cannot be closed.