Package org.openscience.cdk.io
Class MDLRXNReader
java.lang.Object
org.openscience.cdk.io.ChemObjectIO
org.openscience.cdk.io.DefaultChemObjectReader
org.openscience.cdk.io.MDLRXNReader
- All Implemented Interfaces:
Closeable
,AutoCloseable
,IChemObjectIO
,IChemObjectReader
,ISimpleChemObjectReader
Deprecated.
Use V2000 or V3000
Reads a molecule from an MDL RXN file [Dalby, A. et. al.. Journal of Chemical Information and Computer Sciences. 1992. 32].
- Author:
- Egon Willighagen
- Source code:
- main
- Belongs to CDK module:
- io
- Keywords:
- file format, MDL RXN
- Created on:
- 2003-07-24
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Nested Class Summary
Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader
IChemObjectReader.Mode
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Field Summary
FieldsFields inherited from class org.openscience.cdk.io.DefaultChemObjectReader
errorHandler, mode
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Constructor Summary
ConstructorsConstructorDescriptionDeprecated.MDLRXNReader
(InputStream input) Deprecated.MDLRXNReader
(InputStream input, IChemObjectReader.Mode mode) Deprecated.MDLRXNReader
(Reader in) Deprecated.Constructs a new MDLReader that can read Molecule from a given Reader.MDLRXNReader
(Reader in, IChemObjectReader.Mode mode) Deprecated. -
Method Summary
Modifier and TypeMethodDescriptionboolean
accepts
(Class<? extends IChemObject> classObject) Deprecated.Returns whether the givenIChemObject
can be read or written.boolean
accepts
(IChemObject object) Deprecated.void
close()
Deprecated.Closes this IChemObjectIO's resources.Deprecated.Returns theIResourceFormat
class for this IO class.<T extends IChemObject>
Tread
(T object) Deprecated.Takes an object which subclasses IChemObject, e.g.Molecule, and will read this (from file, database, internet etc).void
setReader
(InputStream input) Deprecated.Sets the InputStream from which this ChemObjectReader should read the contents.void
Deprecated.Sets the Reader from which this ChemObjectReader should read the contents.Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader
fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode
Methods inherited from class org.openscience.cdk.io.ChemObjectIO
addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface org.openscience.cdk.io.IChemObjectIO
addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
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Field Details
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UNEXPECTED_END_OF_INPUT
Deprecated.- See Also:
-
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Constructor Details
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MDLRXNReader
Deprecated.Constructs a new MDLReader that can read Molecule from a given Reader.- Parameters:
in
- The Reader to read from
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MDLRXNReader
Deprecated. -
MDLRXNReader
Deprecated. -
MDLRXNReader
Deprecated. -
MDLRXNReader
public MDLRXNReader()Deprecated.
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Method Details
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getFormat
Deprecated.Description copied from interface:IChemObjectIO
Returns theIResourceFormat
class for this IO class. -
setReader
Deprecated.Description copied from interface:IChemObjectReader
Sets the Reader from which this ChemObjectReader should read the contents.- Throws:
CDKException
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setReader
Deprecated.Description copied from interface:IChemObjectReader
Sets the InputStream from which this ChemObjectReader should read the contents.- Throws:
CDKException
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accepts
Deprecated.Description copied from interface:IChemObjectIO
Returns whether the givenIChemObject
can be read or written.- Parameters:
classObject
-IChemObject
of which is tested if it can be handled.- Returns:
- true, if the
IChemObject
can be handled.
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read
Deprecated.Takes an object which subclasses IChemObject, e.g.Molecule, and will read this (from file, database, internet etc). If the specific implementation does not support a specific IChemObject it will throw an Exception.- Parameters:
object
- The object that subclasses IChemObject- Returns:
- The IChemObject read
- Throws:
CDKException
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accepts
Deprecated. -
close
Deprecated.Description copied from interface:IChemObjectIO
Closes this IChemObjectIO's resources.- Throws:
IOException
- when the wrapper IO class cannot be closed.
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