Class MDLRXNV3000Reader

  • All Implemented Interfaces:
    Closeable, AutoCloseable, IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

    public class MDLRXNV3000Reader
    extends DefaultChemObjectReader
    Class that implements the new MDL mol format introduced in August 2002. The overall syntax is compatible with the old format, but I consider the format completely different, and thus implemented a separate Reader for it.
    Author:
    Egon Willighagen <egonw@sci.kun.nl>
    Source code:
    main
    Belongs to CDK module:
    io
    Keywords:
    MDL V3000
    Created on:
    2003-10-05
    Requires:
    java1.4+
    • Method Detail

      • accepts

        public boolean accepts​(Class<? extends IChemObject> classObject)
        Description copied from interface: IChemObjectIO
        Returns whether the given IChemObject can be read or written.
        Parameters:
        classObject - IChemObject of which is tested if it can be handled.
        Returns:
        true, if the IChemObject can be handled.
      • read

        public <T extends IChemObject> T read​(T object)
                                       throws CDKException
        Description copied from interface: ISimpleChemObjectReader
        Reads an IChemObject of type "object" from input. The constructor of the actual implementation may take a Reader as input to get a very flexible reader that can read from string, files, etc.
        Parameters:
        object - the type of object to return
        Returns:
        returns an object of that contains the content (or part) of the input content
        Throws:
        CDKException - it is thrown if the type of information is not available from the input
      • accepts

        public boolean accepts​(IChemObject object)
      • close

        public void close()
                   throws IOException
        Description copied from interface: IChemObjectIO
        Closes this IChemObjectIO's resources.
        Throws:
        IOException - when the wrapper IO class cannot be closed.