Package org.openscience.cdk.io
Class ZMatrixReader
- java.lang.Object
-
- org.openscience.cdk.io.ChemObjectIO
-
- org.openscience.cdk.io.DefaultChemObjectReader
-
- org.openscience.cdk.io.ZMatrixReader
-
- All Implemented Interfaces:
Closeable
,AutoCloseable
,IChemObjectIO
,IChemObjectReader
,ISimpleChemObjectReader
public class ZMatrixReader extends DefaultChemObjectReader
It reads Z matrices like in Gaussian input files. It seems that it cannot handle Z matrices where values are given via a stringID for which the value is given later.- Source code:
- main
- Belongs to CDK module:
- extra
- Keywords:
- file format, Z-matrix
-
-
Nested Class Summary
-
Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader
IChemObjectReader.Mode
-
-
Field Summary
-
Fields inherited from class org.openscience.cdk.io.DefaultChemObjectReader
errorHandler, mode
-
-
Constructor Summary
Constructors Constructor Description ZMatrixReader()
ZMatrixReader(InputStream input)
ZMatrixReader(Reader input)
Constructs a ZMatrixReader from a Reader that contains the data to be parsed.
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
accepts(Class<? extends IChemObject> classObject)
Returns whether the givenIChemObject
can be read or written.void
close()
Closes this IChemObjectIO's resources.IResourceFormat
getFormat()
Returns theIResourceFormat
class for this IO class.<T extends IChemObject>
Tread(T object)
Returns a IChemObject of type object bye reading from the input.void
setReader(InputStream input)
Sets the InputStream from which this ChemObjectReader should read the contents.void
setReader(Reader input)
Sets the Reader from which this ChemObjectReader should read the contents.-
Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader
fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode
-
Methods inherited from class org.openscience.cdk.io.ChemObjectIO
addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
-
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-
Methods inherited from interface org.openscience.cdk.io.IChemObjectIO
addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener
-
-
-
-
Constructor Detail
-
ZMatrixReader
public ZMatrixReader(Reader input)
Constructs a ZMatrixReader from a Reader that contains the data to be parsed.- Parameters:
input
- Reader containing the data to read
-
ZMatrixReader
public ZMatrixReader(InputStream input)
-
ZMatrixReader
public ZMatrixReader()
-
-
Method Detail
-
getFormat
public IResourceFormat getFormat()
Description copied from interface:IChemObjectIO
Returns theIResourceFormat
class for this IO class.
-
setReader
public void setReader(Reader input) throws CDKException
Description copied from interface:IChemObjectReader
Sets the Reader from which this ChemObjectReader should read the contents.- Throws:
CDKException
-
setReader
public void setReader(InputStream input) throws CDKException
Description copied from interface:IChemObjectReader
Sets the InputStream from which this ChemObjectReader should read the contents.- Throws:
CDKException
-
accepts
public boolean accepts(Class<? extends IChemObject> classObject)
Description copied from interface:IChemObjectIO
Returns whether the givenIChemObject
can be read or written.- Parameters:
classObject
-IChemObject
of which is tested if it can be handled.- Returns:
- true, if the
IChemObject
can be handled.
-
read
public <T extends IChemObject> T read(T object) throws CDKException
Returns a IChemObject of type object bye reading from the input. The function supports only reading of ChemFile's.- Parameters:
object
- IChemObject that types the class to return.- Returns:
- returns an object of that contains the content (or part) of the input content
- Throws:
CDKException
- when a IChemObject is requested that cannot be read.
-
close
public void close() throws IOException
Description copied from interface:IChemObjectIO
Closes this IChemObjectIO's resources.- Throws:
IOException
- when the wrapper IO class cannot be closed.
-
-