Class MDLRXNV2000Reader

All Implemented Interfaces:
Closeable, AutoCloseable, IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

public class MDLRXNV2000Reader extends DefaultChemObjectReader
Reads a molecule from an MDL RXN file [Dalby, A. et. al.. Journal of Chemical Information and Computer Sciences. 1992. 32]. This MDL RXN reader uses the MDLV2000 reader to read each mol file
Author:
Egon Willighagen, Thomas Kuhn
This class is affected by these bug(s):
1849923
Source code:
main
Belongs to CDK module:
io
Keywords:
file format, MDL RXN
Created on:
2003-07-24
  • Field Details

  • Constructor Details

    • MDLRXNV2000Reader

      public MDLRXNV2000Reader(Reader in)
      Constructs a new MDLReader that can read Molecule from a given Reader.
      Parameters:
      in - The Reader to read from
    • MDLRXNV2000Reader

      public MDLRXNV2000Reader(Reader in, IChemObjectReader.Mode mode)
    • MDLRXNV2000Reader

      public MDLRXNV2000Reader(InputStream input)
    • MDLRXNV2000Reader

      public MDLRXNV2000Reader(InputStream input, IChemObjectReader.Mode mode)
    • MDLRXNV2000Reader

      public MDLRXNV2000Reader()
  • Method Details

    • getFormat

      public IResourceFormat getFormat()
      Description copied from interface: IChemObjectIO
      Returns the IResourceFormat class for this IO class.
    • setReader

      public void setReader(Reader input) throws CDKException
      Description copied from interface: IChemObjectReader
      Sets the Reader from which this ChemObjectReader should read the contents.
      Throws:
      CDKException
    • setReader

      public void setReader(InputStream input) throws CDKException
      Description copied from interface: IChemObjectReader
      Sets the InputStream from which this ChemObjectReader should read the contents.
      Throws:
      CDKException
    • accepts

      public boolean accepts(Class<? extends IChemObject> classObject)
      Description copied from interface: IChemObjectIO
      Returns whether the given IChemObject can be read or written.
      Parameters:
      classObject - IChemObject of which is tested if it can be handled.
      Returns:
      true, if the IChemObject can be handled.
    • read

      public <T extends IChemObject> T read(T object) throws CDKException
      Takes an object which subclasses IChemObject, e.g.Molecule, and will read this (from file, database, internet etc). If the specific implementation does not support a specific IChemObject it will throw an Exception.
      Parameters:
      object - The object that subclasses IChemObject
      Returns:
      The IChemObject read
      Throws:
      CDKException
    • accepts

      public boolean accepts(IChemObject object)
    • close

      public void close() throws IOException
      Description copied from interface: IChemObjectIO
      Closes this IChemObjectIO's resources.
      Throws:
      IOException - when the wrapper IO class cannot be closed.