Uses of Interface
org.openscience.cdk.io.ISimpleChemObjectReader

Packages that use ISimpleChemObjectReader

Package	Description
org.openscience.cdk.io
org.openscience.cdk.io.random
org.openscience.cdk.io.rdf

Uses of ISimpleChemObjectReader in org.openscience.cdk.io

Classes in org.openscience.cdk.io that implement ISimpleChemObjectReader

Modifier and Type	Class	Description
class	CIFReader	This is not a reader for the CIF and mmCIF crystallographic formats.
class	CMLReader	Reads a molecule in CML 1.x and 2.0 format.
class	CrystClustReader
class	CTXReader	Reader that extracts information from the IDENT, NAME, ATOMS and BONDS blocks in CTX files.
class	DefaultChemObjectReader	Abstract class that ChemObjectReader's can implement to have it take care of basic stuff, like managing the ReaderListeners.
class	GamessReader	A reader for GAMESS log file.
class	Gaussian03Reader	A reader for Gaussian03 output.
class	Gaussian98Reader	A reader for Gaussian98 output.
class	GhemicalMMReader	Reads Ghemical ( http://www.uku.fi/~thassine/ghemical/) molecular mechanics (*.mm1gp) files.
class	HINReader	Reads an object from HIN formated input.
class	INChIPlainTextReader	Reads the content of a IUPAC/NIST Chemical Identifier (INChI) plain text document.
class	INChIReader	Reads the content of a IUPAC/NIST Chemical Identifier (INChI) document.
class	MDLReader	Deprecated. This reader is only for molfiles without a version tag, typically the most common molfile now encountered is V2000 and the MDLV2000Reader should be used instead.
class	MDLRXNReader	Deprecated. Use V2000 or V3000
class	MDLRXNV2000Reader	Reads a molecule from an MDL RXN file [Dalby, A. et. al.. Journal of Chemical Information and Computer Sciences. 1992. 32].
class	MDLRXNV3000Reader	Class that implements the new MDL mol format introduced in August 2002.
class	MDLV2000Reader	Reads content from MDL molfiles and SD files.
class	MDLV3000Reader	Class that implements the MDL mol V3000 format.
class	Mol2Reader	Reads a molecule from an Mol2 file, such as written by Sybyl.
class	Mopac7Reader	Reads MOPAC output, extracts several electronic parameters and assigns them as a molecule properties.
class	MoSSOutputReader	Reader for MoSS output files [Unknown BibTeXML type: BOR2002] which present the results of a substructure mining study.
class	PCCompoundASNReader	Reads an object from ASN formated input for PubChem Compound entries.
class	PCCompoundXMLReader	Reads an object from ASN.1 XML formated input for PubChem Compound entries.
class	PCSubstanceXMLReader	Reads an object from ASN formated input for PubChem Compound entries.
class	PDBReader	Reads the contents of a PDBFile.
class	PMPReader	Reads an frames from a PMP formated input.
class	RGroupQueryReader	A reader for Symyx' Rgroup files (RGFiles).
class	ShelXReader	A reader for ShelX output (RES) files.
class	SMILESReader	This Reader reads files which has one SMILES string on each line, where the format is given as below:
class	VASPReader	Read output files generated with the VASP software.
class	XYZReader	Reads an object from XYZ formated input.
class	ZMatrixReader	It reads Z matrices like in Gaussian input files.

Methods in org.openscience.cdk.io that return ISimpleChemObjectReader

Modifier and Type	Method	Description
ISimpleChemObjectReader	ReaderFactory.createReader(InputStream input)	Detects the format of the Reader input, and if known, it will return a CDK Reader to read the format, or null when the reader is not implemented.
ISimpleChemObjectReader	ReaderFactory.createReader(Reader input)	Detects the format of the Reader input, and if known, it will return a CDK Reader to read the format.
ISimpleChemObjectReader	ReaderFactory.createReader(IChemFormat format)	Creates a new IChemObjectReader based on the given IChemFormat.

Uses of ISimpleChemObjectReader in org.openscience.cdk.io.random

Fields in org.openscience.cdk.io.random declared as ISimpleChemObjectReader

Modifier and Type	Field	Description
protected ISimpleChemObjectReader	RandomAccessReader.chemObjectReader

Methods in org.openscience.cdk.io.random that return ISimpleChemObjectReader

Modifier and Type	Method	Description
abstract ISimpleChemObjectReader	RandomAccessReader.createChemObjectReader()
ISimpleChemObjectReader	RandomAccessSDFReader.createChemObjectReader()

Methods in org.openscience.cdk.io.random with parameters of type ISimpleChemObjectReader

Modifier and Type	Method	Description
void	RandomAccessReader.setChemObjectReader(ISimpleChemObjectReader chemObjectReader)

Uses of ISimpleChemObjectReader in org.openscience.cdk.io.rdf

Classes in org.openscience.cdk.io.rdf that implement ISimpleChemObjectReader

Modifier and Type	Class	Description
class	CDKOWLReader	Reads content from a CDK OWL serialization.