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Package Hierarchies:
org.openscience.cdk
,
org.openscience.cdk.annotations
,
org.openscience.cdk.aromaticity
,
org.openscience.cdk.atomtype
,
org.openscience.cdk.atomtype.mapper
,
org.openscience.cdk.charges
,
org.openscience.cdk.config
,
org.openscience.cdk.config.atomtypes
,
org.openscience.cdk.config.fragments
,
org.openscience.cdk.config.isotopes
,
org.openscience.cdk.controller
,
org.openscience.cdk.debug
,
org.openscience.cdk.dict
,
org.openscience.cdk.event
,
org.openscience.cdk.exception
,
org.openscience.cdk.fingerprint
,
org.openscience.cdk.formula
,
org.openscience.cdk.formula.rules
,
org.openscience.cdk.fragment
,
org.openscience.cdk.geometry
,
org.openscience.cdk.geometry.alignment
,
org.openscience.cdk.geometry.cip
,
org.openscience.cdk.geometry.cip.rules
,
org.openscience.cdk.geometry.surface
,
org.openscience.cdk.geometry.volume
,
org.openscience.cdk.graph
,
org.openscience.cdk.graph.invariant
,
org.openscience.cdk.graph.invariant.exception
,
org.openscience.cdk.graph.matrix
,
org.openscience.cdk.graph.rebond
,
org.openscience.cdk.inchi
,
org.openscience.cdk.index
,
org.openscience.cdk.interfaces
,
org.openscience.cdk.io
,
org.openscience.cdk.io.cml
,
org.openscience.cdk.io.formats
,
org.openscience.cdk.io.inchi
,
org.openscience.cdk.io.iterator
,
org.openscience.cdk.io.iterator.event
,
org.openscience.cdk.io.listener
,
org.openscience.cdk.io.program
,
org.openscience.cdk.io.pubchemxml
,
org.openscience.cdk.io.random
,
org.openscience.cdk.io.rdf
,
org.openscience.cdk.io.setting
,
org.openscience.cdk.isomorphism
,
org.openscience.cdk.isomorphism.matchers
,
org.openscience.cdk.isomorphism.matchers.smarts
,
org.openscience.cdk.isomorphism.mcss
,
org.openscience.cdk.iupac.parser
,
org.openscience.cdk.layout
,
org.openscience.cdk.libio.cml
,
org.openscience.cdk.libio.jena
,
org.openscience.cdk.libio.md
,
org.openscience.cdk.math
,
org.openscience.cdk.math.qm
,
org.openscience.cdk.modeling.builder3d
,
org.openscience.cdk.nonotify
,
org.openscience.cdk.normalize
,
org.openscience.cdk.pharmacophore
,
org.openscience.cdk.protein
,
org.openscience.cdk.protein.data
,
org.openscience.cdk.qsar
,
org.openscience.cdk.qsar.descriptors.atomic
,
org.openscience.cdk.qsar.descriptors.atompair
,
org.openscience.cdk.qsar.descriptors.bond
,
org.openscience.cdk.qsar.descriptors.molecular
,
org.openscience.cdk.qsar.descriptors.protein
,
org.openscience.cdk.qsar.result
,
org.openscience.cdk.reaction
,
org.openscience.cdk.reaction.mechanism
,
org.openscience.cdk.reaction.type
,
org.openscience.cdk.reaction.type.parameters
,
org.openscience.cdk.renderer
,
org.openscience.cdk.renderer.color
,
org.openscience.cdk.renderer.elements
,
org.openscience.cdk.renderer.elements.path
,
org.openscience.cdk.renderer.font
,
org.openscience.cdk.renderer.generators
,
org.openscience.cdk.renderer.generators.parameter
,
org.openscience.cdk.renderer.selection
,
org.openscience.cdk.renderer.visitor
,
org.openscience.cdk.ringsearch
,
org.openscience.cdk.ringsearch.cyclebasis
,
org.openscience.cdk.signature
,
org.openscience.cdk.silent
,
org.openscience.cdk.similarity
,
org.openscience.cdk.smiles
,
org.openscience.cdk.smiles.smarts
,
org.openscience.cdk.smiles.smarts.parser
,
org.openscience.cdk.smiles.smarts.parser.visitor
,
org.openscience.cdk.smsd
,
org.openscience.cdk.smsd.algorithm.matchers
,
org.openscience.cdk.smsd.algorithm.mcgregor
,
org.openscience.cdk.smsd.algorithm.mcsplus
,
org.openscience.cdk.smsd.algorithm.rgraph
,
org.openscience.cdk.smsd.algorithm.single
,
org.openscience.cdk.smsd.algorithm.vflib
,
org.openscience.cdk.smsd.algorithm.vflib.builder
,
org.openscience.cdk.smsd.algorithm.vflib.interfaces
,
org.openscience.cdk.smsd.algorithm.vflib.map
,
org.openscience.cdk.smsd.algorithm.vflib.query
,
org.openscience.cdk.smsd.filters
,
org.openscience.cdk.smsd.global
,
org.openscience.cdk.smsd.helper
,
org.openscience.cdk.smsd.interfaces
,
org.openscience.cdk.smsd.labelling
,
org.openscience.cdk.smsd.ring
,
org.openscience.cdk.smsd.tools
,
org.openscience.cdk.stereo
,
org.openscience.cdk.structgen
,
org.openscience.cdk.structgen.stochastic
,
org.openscience.cdk.structgen.stochastic.operator
,
org.openscience.cdk.tautomers
,
org.openscience.cdk.templates
,
org.openscience.cdk.templates.saturatedhydrocarbons
,
org.openscience.cdk.tools
,
org.openscience.cdk.tools.diff
,
org.openscience.cdk.tools.diff.tree
,
org.openscience.cdk.tools.features
,
org.openscience.cdk.tools.manipulator
,
org.openscience.cdk.tools.periodictable
,
org.openscience.cdk.validate
Class Hierarchy
java.lang.
Object
org.openscience.cdk.io.formats.
ABINITFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
javax.swing.
AbstractAction
(implements javax.swing.
Action
, java.lang.
Cloneable
, java.io.
Serializable
)
org.openscience.cdk.renderer.
JCPAction2D
org.openscience.cdk.qsar.
AbstractAtomicDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
IPAtomicHOSEDescriptor
org.openscience.cdk.qsar.descriptors.atomic.
IPAtomicLearningDescriptor
org.openscience.cdk.qsar.descriptors.atomic.
PartialPiChargeDescriptor
org.openscience.cdk.qsar.descriptors.atomic.
PartialSigmaChargeDescriptor
org.openscience.cdk.qsar.descriptors.atomic.
PartialTChargeMMFF94Descriptor
org.openscience.cdk.qsar.descriptors.atomic.
PartialTChargePEOEDescriptor
org.openscience.cdk.qsar.descriptors.atomic.
ProtonAffinityHOSEDescriptor
org.openscience.cdk.renderer.visitor.
AbstractAWTDrawVisitor
(implements org.openscience.cdk.renderer.visitor.
IDrawVisitor
)
org.openscience.cdk.renderer.visitor.
AWTDrawVisitor
org.openscience.cdk.qsar.
AbstractBondDescriptor
(implements org.openscience.cdk.qsar.
IBondDescriptor
)
org.openscience.cdk.qsar.descriptors.bond.
BondPartialPiChargeDescriptor
org.openscience.cdk.qsar.descriptors.bond.
BondPartialSigmaChargeDescriptor
org.openscience.cdk.qsar.descriptors.bond.
BondPartialTChargeDescriptor
org.openscience.cdk.qsar.descriptors.bond.
IPBondLearningDescriptor
java.util.
AbstractCollection
<E> (implements java.util.
Collection
<E>)
java.util.
AbstractList
<E> (implements java.util.
List
<E>)
java.util.
Vector
<E> (implements java.lang.
Cloneable
, java.util.
List
<E>, java.util.
RandomAccess
, java.io.
Serializable
)
org.openscience.cdk.tools.
FixedSizeStack
(implements java.io.
Serializable
)
org.openscience.cdk.ringsearch.
Path
org.openscience.cdk.ringsearch.
Queue
org.openscience.cdk.tools.diff.tree.
AbstractDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.tools.diff.tree.
AbstractDifferenceList
(implements org.openscience.cdk.tools.diff.tree.
IDifferenceList
)
org.openscience.cdk.tools.diff.tree.
BooleanArrayDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifferenceList
)
org.openscience.cdk.tools.diff.tree.
ChemObjectDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifferenceList
)
org.openscience.cdk.tools.diff.tree.
Point2dDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifferenceList
)
org.openscience.cdk.tools.diff.tree.
Point3dDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifferenceList
)
org.openscience.cdk.renderer.font.
AbstractFontManager
(implements org.openscience.cdk.renderer.font.
IFontManager
)
org.openscience.cdk.renderer.font.
AWTFontManager
org.openscience.cdk.renderer.generators.parameter.
AbstractGeneratorParameter
<T> (implements org.openscience.cdk.renderer.generators.
IGeneratorParameter
<T>)
org.openscience.cdk.renderer.generators.
AtomNumberGenerator.AtomColorer
org.openscience.cdk.renderer.generators.
AtomNumberGenerator.AtomNumberTextColor
org.openscience.cdk.renderer.generators.
AtomNumberGenerator.ColorByType
org.openscience.cdk.renderer.generators.
AtomNumberGenerator.Offset
org.openscience.cdk.renderer.generators.
AtomNumberGenerator.WillDrawAtomNumbers
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.AtomColor
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.AtomColorer
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.AtomRadius
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.ColorByType
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.CompactAtom
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.CompactShape
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.KekuleStructure
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.ShowEndCarbons
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.ShowExplicitHydrogens
org.openscience.cdk.renderer.generators.
BasicBondGenerator.BondDistance
org.openscience.cdk.renderer.generators.
BasicBondGenerator.BondLength
org.openscience.cdk.renderer.generators.
BasicBondGenerator.BondWidth
org.openscience.cdk.renderer.generators.
BasicBondGenerator.DefaultBondColor
org.openscience.cdk.renderer.generators.
BasicBondGenerator.TowardsRingCenterProportion
org.openscience.cdk.renderer.generators.
BasicBondGenerator.WedgeWidth
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.ArrowHeadWidth
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.BackgroundColor
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.FitToScreen
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.FontName
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.ForegroundColor
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.Margin
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.Scale
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.ShowMoleculeTitle
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.ShowTooltip
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.UseAntiAliasing
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.UsedFontStyle
org.openscience.cdk.renderer.generators.
BasicSceneGenerator.ZoomFactor
org.openscience.cdk.renderer.generators.
BoundsGenerator.BoundsColor
org.openscience.cdk.renderer.generators.
ExtendedAtomGenerator.ShowAtomTypeNames
org.openscience.cdk.renderer.generators.
ExtendedAtomGenerator.ShowImplicitHydrogens
org.openscience.cdk.renderer.generators.
MappingGenerator.AtomAtomMappingLineColor
org.openscience.cdk.renderer.generators.
MappingGenerator.MappingLineWidth
org.openscience.cdk.renderer.generators.
MappingGenerator.ShowAtomAtomMapping
org.openscience.cdk.renderer.generators.
ReactionSceneGenerator.ArrowHeadWidth
org.openscience.cdk.renderer.generators.
ReactionSceneGenerator.ShowReactionBoxes
org.openscience.cdk.renderer.
RendererModel.ColorHash
org.openscience.cdk.renderer.
RendererModel.ExternalHighlightColor
org.openscience.cdk.renderer.generators.
RingGenerator.CDKStyleAromaticity
org.openscience.cdk.renderer.generators.
RingGenerator.RingProportion
org.openscience.cdk.renderer.generators.
RingGenerator.ShowAromaticity
org._3pq.jgrapht.graph.AbstractGraph (implements org._3pq.jgrapht.Graph)
org._3pq.jgrapht.graph.Subgraph (implements java.io.
Serializable
)
org._3pq.jgrapht.graph.UndirectedSubgraph (implements org._3pq.jgrapht.UndirectedGraph)
org.openscience.cdk.ringsearch.cyclebasis.
SimpleCycle
signature.AbstractGraphBuilder
org.openscience.cdk.signature.
MoleculeFromSignatureBuilder
signature.AbstractGraphSignature
org.openscience.cdk.signature.
MoleculeSignature
org.openscience.cdk.smsd.interfaces.
AbstractMCS
org.openscience.cdk.smsd.
Isomorphism
(implements java.io.
Serializable
)
org.openscience.cdk.smsd.interfaces.
AbstractMCSAlgorithm
org.openscience.cdk.smsd.algorithm.rgraph.
CDKMCSHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.smsd.algorithm.mcsplus.
MCSPlusHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.smsd.algorithm.single.
SingleMappingHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.smsd.algorithm.vflib.
VFlibMCSHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
signature.AbstractQuotientGraph
org.openscience.cdk.signature.
SignatureQuotientGraph
org.openscience.cdk.smsd.labelling.
AbstractReactionLabeller
org.openscience.cdk.smsd.labelling.
SignatureReactionCanoniser
(implements org.openscience.cdk.smsd.labelling.
ICanonicalReactionLabeller
)
org.openscience.cdk.smsd.labelling.
SmilesReactionCanoniser
(implements org.openscience.cdk.smsd.labelling.
ICanonicalReactionLabeller
)
org.openscience.cdk.renderer.
AbstractRenderer
<T>
org.openscience.cdk.renderer.
AtomContainerRenderer
(implements org.openscience.cdk.renderer.
IRenderer
<T>)
org.openscience.cdk.renderer.
ChemModelRenderer
(implements org.openscience.cdk.renderer.
IRenderer
<T>)
org.openscience.cdk.renderer.
MoleculeSetRenderer
(implements org.openscience.cdk.renderer.
IRenderer
<T>)
org.openscience.cdk.renderer.
ReactionRenderer
(implements org.openscience.cdk.renderer.
IRenderer
<T>)
org.openscience.cdk.renderer.
ReactionSetRenderer
(implements org.openscience.cdk.renderer.
IRenderer
<T>)
org.openscience.cdk.renderer.selection.
AbstractSelection
(implements org.openscience.cdk.renderer.selection.
IChemObjectSelection
)
org.openscience.cdk.smsd.interfaces.
AbstractSubGraph
org.openscience.cdk.smsd.algorithm.rgraph.
CDKSubGraphHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.smsd.algorithm.vflib.
VFlibSubStructureHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.smsd.algorithm.vflib.
VFlibTurboHandler
(implements org.openscience.cdk.smsd.interfaces.
IMCSBase
)
org.openscience.cdk.validate.
AbstractValidator
(implements org.openscience.cdk.validate.
IValidator
)
org.openscience.cdk.validate.
BasicValidator
org.openscience.cdk.validate.
CDKValidator
org.openscience.cdk.validate.
DictionaryValidator
org.openscience.cdk.validate.
Geometry3DValidator
signature.AbstractVertexSignature
org.openscience.cdk.signature.
AtomSignature
org.openscience.cdk.io.formats.
Aces2Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.qsar.descriptors.molecular.
AcidicGroupCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.formula.
AdductFormula
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAdductFormula
, java.lang.
Iterable
<T>)
org.openscience.cdk.debug.
DebugAdductFormula
(implements org.openscience.cdk.interfaces.
IAdductFormula
)
org.openscience.cdk.nonotify.
NNAdductFormula
org.openscience.cdk.silent.
AdductFormula
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAdductFormula
, java.lang.
Iterable
<T>)
org.openscience.cdk.reaction.mechanism.
AdductionLPMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.reaction.mechanism.
AdductionPBMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.io.formats.
ADFFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.graph.matrix.
AdjacencyMatrix
(implements org.openscience.cdk.graph.matrix.
IGraphMatrix
)
org.openscience.cdk.io.formats.
AlchemyFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.ringsearch.
AllRingsFinder
org.openscience.cdk.ringsearch.
AllRingsFinderMod
org.openscience.cdk.qsar.descriptors.molecular.
ALOGPDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
AminoAcidCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.tools.manipulator.
AminoAcidManipulator
org.openscience.cdk.templates.
AminoAcids
org.openscience.cdk.math.qm.
AngularMomentum
org.openscience.cdk.qsar.descriptors.molecular.
APolDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
AromaticAtomsCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
AromaticBondsCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.aromaticity.
AromaticityCalculator
org.openscience.cdk.renderer.elements.
ArrowElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.renderer.generators.
AtomContainerBoundsGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.tools.manipulator.
AtomContainerComparator
(implements java.util.
Comparator
<T>)
org.openscience.cdk.tools.manipulator.
AtomContainerComparatorBy2DCenter
(implements java.util.
Comparator
<T>)
org.openscience.cdk.tools.diff.
AtomContainerDiff
org.openscience.cdk.tools.manipulator.
AtomContainerManipulator
org.openscience.cdk.smsd.tools.
ExtAtomContainerManipulator
org.openscience.cdk.normalize.
SMSDNormalizer
org.openscience.cdk.graph.
AtomContainerPermutor
(implements java.util.
Iterator
<E>)
org.openscience.cdk.graph.
AtomContainerAtomPermutor
org.openscience.cdk.graph.
AtomContainerBondPermutor
org.openscience.cdk.smsd.labelling.
AtomContainerPrinter
org.openscience.cdk.tools.manipulator.
AtomContainerSetManipulator
org.openscience.cdk.qsar.descriptors.molecular.
AtomCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
AtomDegreeDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.tools.diff.
AtomDiff
org.openscience.cdk.qsar.descriptors.atomic.
AtomHybridizationDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
AtomHybridizationVSEPRDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.bond.
AtomicNumberDifferenceDescriptor
(implements org.openscience.cdk.qsar.
IBondDescriptor
)
org.openscience.cdk.tools.
AtomicProperties
org.openscience.cdk.isomorphism.
AtomMappingTools
org.openscience.cdk.renderer.generators.
AtomNumberGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.
AtomParity
(implements org.openscience.cdk.interfaces.
IAtomParity
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugAtomParity
(implements org.openscience.cdk.interfaces.
IAtomParity
)
org.openscience.cdk.nonotify.
NNAtomParity
org.openscience.cdk.silent.
AtomParity
(implements org.openscience.cdk.interfaces.
IAtomParity
, java.io.
Serializable
)
org.openscience.cdk.layout.
AtomPlacer
org.openscience.cdk.modeling.builder3d.
AtomPlacer3D
org.openscience.cdk.modeling.builder3d.
AtomTetrahedralLigandPlacer3D
org.openscience.cdk.geometry.
AtomTools
org.openscience.cdk.charges.
AtomTypeCharges
(implements org.openscience.cdk.charges.
IChargeCalculator
)
org.openscience.cdk.tools.diff.
AtomTypeDiff
org.openscience.cdk.config.
AtomTypeFactory
org.openscience.cdk.tools.diff.tree.
AtomTypeHybridizationDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.tools.manipulator.
AtomTypeManipulator
org.openscience.cdk.atomtype.mapper.
AtomTypeMapper
org.openscience.cdk.config.atomtypes.
AtomTypeReader
org.openscience.cdk.tools.
AtomTypeTools
org.openscience.cdk.qsar.descriptors.atomic.
AtomValenceDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.
AtomValenceTool
org.openscience.cdk.iupac.parser.
AttachedGroup
org.openscience.cdk.qsar.descriptors.molecular.
AutocorrelationDescriptorCharge
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
AutocorrelationDescriptorMass
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
AutocorrelationDescriptorPolarizability
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.renderer.
AverageBondLengthCalculator
org.openscience.cdk.renderer.generators.
BasicAtomGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.renderer.generators.
AtomMassGenerator
org.openscience.cdk.renderer.generators.
ExtendedAtomGenerator
org.openscience.cdk.renderer.generators.
BasicBondGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.renderer.generators.
RingGenerator
org.openscience.cdk.renderer.generators.
BasicGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.qsar.descriptors.molecular.
BasicGroupCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.renderer.generators.
BasicSceneGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.qsar.descriptors.molecular.
BCUTDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.graph.
BFSShortestPath
org.openscience.cdk.io.formats.
BGFFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.graph.
BiconnectivityInspector
org.openscience.cdk.smsd.helper.
BinaryTree
org.openscience.cdk.smsd.algorithm.mcsplus.
BKKCKCF
org.openscience.cdk.qsar.descriptors.molecular.
BondCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.tools.diff.
BondDiff
org.openscience.cdk.smsd.tools.
BondEnergies
org.openscience.cdk.smsd.helper.
BondEnergy
org.openscience.cdk.tools.manipulator.
BondManipulator
org.openscience.cdk.tools.diff.tree.
BondOrderDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.qsar.descriptors.bond.
BondSigmaElectronegativityDescriptor
(implements org.openscience.cdk.qsar.
IBondDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
BondsToAtomDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.geometry.
BondTools
org.openscience.cdk.tools.diff.tree.
BooleanDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.qsar.result.
BooleanResultType
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.result.
BooleanResult
org.openscience.cdk.renderer.
BoundsCalculator
org.openscience.cdk.renderer.generators.
BoundsGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.qsar.descriptors.molecular.
BPolDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.tools.
BremserOneSphereHOSECodePredictor
(implements java.io.
Serializable
)
org.openscience.cdk.io.formats.
BSFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.graph.rebond.
Bspt
org.openscience.cdk.io.formats.
CacaoCartesianFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
CacaoInternalFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
CACheFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.graph.invariant.
CanonicalLabeler
org.openscience.cdk.smsd.labelling.
CanonicalLabellingAdaptor
(implements org.openscience.cdk.smsd.labelling.
ICanonicalMoleculeLabeller
)
org.openscience.cdk.qsar.descriptors.molecular.
CarbonTypesDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.index.
CASNumber
org.openscience.cdk.
CDK
org.openscience.cdk.libio.jena.
CDK
org.openscience.cdk.renderer.color.
CDK2DAtomColors
(implements org.openscience.cdk.renderer.color.
IAtomColorer
, java.io.
Serializable
)
org.openscience.cdk.renderer.color.
CDKAtomColors
(implements org.openscience.cdk.renderer.color.
IAtomColorer
)
org.openscience.cdk.atomtype.
CDKAtomTypeMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.config.
CDKBasedAtomTypeConfigurator
(implements org.openscience.cdk.config.
IAtomTypeConfigurator
)
org.openscience.cdk.
CDKConstants
org.openscience.cdk.dict.
CDKDictionaryReferences
org.openscience.cdk.aromaticity.
CDKHueckelAromaticityDetector
org.openscience.cdk.tools.
CDKHydrogenAdder
org.openscience.cdk.smsd.algorithm.rgraph.
CDKMCS
org.openscience.cdk.io.formats.
CDKOWLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.smsd.algorithm.rgraph.
CDKRGraph
org.openscience.cdk.smsd.algorithm.rgraph.
CDKRMap
org.openscience.cdk.smsd.algorithm.rgraph.
CDKRMapHandler
org.openscience.cdk.smsd.algorithm.rgraph.
CDKRNode
org.openscience.cdk.io.formats.
CDKSourceCodeFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.tools.
CDKUtilities
org.openscience.cdk.tools.
CDKValencyChecker
(implements org.openscience.cdk.tools.
IValencyChecker
)
org.openscience.cdk.formula.rules.
ChargeRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.io.formats.
Chem3D_Cartesian_1Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
Chem3D_Cartesian_2Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
ChemDrawFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.tools.manipulator.
ChemFileManipulator
org.openscience.cdk.structgen.stochastic.operator.
ChemGraph
org.openscience.cdk.smsd.filters.
ChemicalFilters
org.openscience.cdk.tools.manipulator.
ChemModelManipulator
org.openscience.cdk.
ChemObject
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObject
, java.io.
Serializable
)
org.openscience.cdk.
AtomContainer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomContainer
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.libio.md.
ChargeGroup
org.openscience.cdk.
Crystal
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ICrystal
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugCrystal
(implements org.openscience.cdk.interfaces.
ICrystal
)
org.openscience.cdk.nonotify.
NNCrystal
org.openscience.cdk.debug.
DebugAtomContainer
(implements org.openscience.cdk.interfaces.
IAtomContainer
)
org.openscience.cdk.
Molecule
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMolecule
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugMolecule
(implements org.openscience.cdk.interfaces.
IMolecule
)
org.openscience.cdk.libio.md.
MDMolecule
org.openscience.cdk.nonotify.
NNMolecule
org.openscience.cdk.
Polymer
(implements org.openscience.cdk.interfaces.
IPolymer
, java.io.
Serializable
)
org.openscience.cdk.
BioPolymer
(implements org.openscience.cdk.interfaces.
IBioPolymer
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugBioPolymer
(implements org.openscience.cdk.interfaces.
IBioPolymer
)
org.openscience.cdk.nonotify.
NNBioPolymer
org.openscience.cdk.protein.data.
PDBPolymer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBPolymer
)
org.openscience.cdk.debug.
DebugPDBPolymer
(implements org.openscience.cdk.interfaces.
IBioPolymer
)
org.openscience.cdk.nonotify.
NNPDBPolymer
org.openscience.cdk.debug.
DebugPolymer
(implements org.openscience.cdk.interfaces.
IPolymer
)
org.openscience.cdk.nonotify.
NNPolymer
org.openscience.cdk.
Monomer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMonomer
, java.io.
Serializable
)
org.openscience.cdk.
AminoAcid
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAminoAcid
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugAminoAcid
(implements org.openscience.cdk.interfaces.
IAminoAcid
)
org.openscience.cdk.nonotify.
NNAminoAcid
org.openscience.cdk.debug.
DebugMonomer
(implements org.openscience.cdk.interfaces.
IMonomer
)
org.openscience.cdk.nonotify.
NNMonomer
org.openscience.cdk.protein.data.
PDBMonomer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBMonomer
)
org.openscience.cdk.debug.
DebugPDBMonomer
(implements org.openscience.cdk.interfaces.
IPDBMonomer
)
org.openscience.cdk.nonotify.
NNPDBMonomer
org.openscience.cdk.nonotify.
NNAtomContainer
org.openscience.cdk.isomorphism.matchers.
QueryAtomContainer
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
)
org.openscience.cdk.pharmacophore.
PharmacophoreQuery
org.openscience.cdk.libio.md.
Residue
org.openscience.cdk.
Ring
(implements org.openscience.cdk.interfaces.
IRing
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugRing
(implements org.openscience.cdk.interfaces.
IRing
)
org.openscience.cdk.nonotify.
NNRing
org.openscience.cdk.
Strand
(implements org.openscience.cdk.interfaces.
IStrand
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugStrand
(implements org.openscience.cdk.interfaces.
IStrand
)
org.openscience.cdk.nonotify.
NNStrand
org.openscience.cdk.protein.data.
PDBStrand
org.openscience.cdk.
AtomContainerSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomContainerSet
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugAtomContainerSet
(implements org.openscience.cdk.interfaces.
IAtomContainerSet
)
org.openscience.cdk.
MoleculeSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMoleculeSet
)
org.openscience.cdk.debug.
DebugMoleculeSet
(implements org.openscience.cdk.interfaces.
IMoleculeSet
)
org.openscience.cdk.nonotify.
NNMoleculeSet
org.openscience.cdk.nonotify.
NNAtomContainerSet
org.openscience.cdk.
RingSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IRingSet
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugRingSet
(implements org.openscience.cdk.interfaces.
IRingSet
)
org.openscience.cdk.nonotify.
NNRingSet
org.openscience.cdk.
ChemFile
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemFile
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugChemFile
(implements org.openscience.cdk.interfaces.
IChemFile
)
org.openscience.cdk.nonotify.
NNChemFile
org.openscience.cdk.
ChemModel
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemModel
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugChemModel
(implements org.openscience.cdk.interfaces.
IChemModel
)
org.openscience.cdk.nonotify.
NNChemModel
org.openscience.cdk.
ChemSequence
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObjectListener
, org.openscience.cdk.interfaces.
IChemSequence
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugChemSequence
(implements org.openscience.cdk.interfaces.
IChemSequence
)
org.openscience.cdk.nonotify.
NNChemSequence
org.openscience.cdk.debug.
DebugChemObject
(implements org.openscience.cdk.interfaces.
IChemObject
)
org.openscience.cdk.
ElectronContainer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IElectronContainer
, java.io.
Serializable
)
org.openscience.cdk.
Association
(implements java.lang.
Cloneable
, java.io.
Serializable
)
org.openscience.cdk.
Bond
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IBond
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugBond
(implements org.openscience.cdk.interfaces.
IBond
)
org.openscience.cdk.nonotify.
NNBond
org.openscience.cdk.isomorphism.matchers.
OrderQueryBond
(implements org.openscience.cdk.isomorphism.matchers.
IQueryBond
)
org.openscience.cdk.isomorphism.matchers.
OrderQueryBondOrderOnly
(implements org.openscience.cdk.isomorphism.matchers.
IQueryBond
)
org.openscience.cdk.pharmacophore.
PharmacophoreAngleBond
org.openscience.cdk.pharmacophore.
PharmacophoreBond
org.openscience.cdk.pharmacophore.
PharmacophoreQueryAngleBond
(implements org.openscience.cdk.isomorphism.matchers.
IQueryBond
)
org.openscience.cdk.pharmacophore.
PharmacophoreQueryBond
(implements org.openscience.cdk.isomorphism.matchers.
IQueryBond
)
org.openscience.cdk.isomorphism.matchers.smarts.
SMARTSBond
(implements org.openscience.cdk.isomorphism.matchers.
IQueryBond
)
org.openscience.cdk.isomorphism.matchers.smarts.
AnyOrderQueryBond
org.openscience.cdk.isomorphism.matchers.smarts.
AromaticOrSingleQueryBond
org.openscience.cdk.isomorphism.matchers.smarts.
AromaticQueryBond
org.openscience.cdk.isomorphism.matchers.smarts.
LogicalOperatorBond
org.openscience.cdk.isomorphism.matchers.smarts.
OrderQueryBond
org.openscience.cdk.isomorphism.matchers.smarts.
RingBond
org.openscience.cdk.isomorphism.matchers.smarts.
StereoBond
org.openscience.cdk.debug.
DebugElectronContainer
(implements org.openscience.cdk.interfaces.
IElectronContainer
)
org.openscience.cdk.
LonePair
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ILonePair
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugLonePair
(implements org.openscience.cdk.interfaces.
ILonePair
)
org.openscience.cdk.nonotify.
NNLonePair
org.openscience.cdk.nonotify.
NNElectronContainer
org.openscience.cdk.
SingleElectron
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ISingleElectron
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugSingleElectron
(implements org.openscience.cdk.interfaces.
ISingleElectron
)
org.openscience.cdk.nonotify.
NNSingleElectron
org.openscience.cdk.
Element
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IElement
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugElement
(implements org.openscience.cdk.interfaces.
IElement
)
org.openscience.cdk.
Isotope
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IIsotope
, java.io.
Serializable
)
org.openscience.cdk.
AtomType
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomType
, java.io.
Serializable
)
org.openscience.cdk.
Atom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtom
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugAtom
(implements org.openscience.cdk.interfaces.
IAtom
)
org.openscience.cdk.nonotify.
NNAtom
org.openscience.cdk.protein.data.
PDBAtom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBAtom
)
org.openscience.cdk.debug.
DebugPDBAtom
(implements org.openscience.cdk.interfaces.
IPDBAtom
)
org.openscience.cdk.nonotify.
NNPDBAtom
org.openscience.cdk.pharmacophore.
PharmacophoreAtom
org.openscience.cdk.pharmacophore.
PharmacophoreQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.
PseudoAtom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPseudoAtom
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugPseudoAtom
(implements org.openscience.cdk.interfaces.
IPseudoAtom
)
org.openscience.cdk.
EnzymeResidueLocator
org.openscience.cdk.
FragmentAtom
(implements org.openscience.cdk.interfaces.
IFragmentAtom
)
org.openscience.cdk.debug.
DebugFragmentAtom
org.openscience.cdk.nonotify.
NNFragmentAtom
org.openscience.cdk.isomorphism.matchers.
InverseSymbolSetQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.nonotify.
NNPseudoAtom
org.openscience.cdk.isomorphism.matchers.smarts.
SMARTSAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.isomorphism.matchers.smarts.
AliphaticAtom
org.openscience.cdk.isomorphism.matchers.smarts.
AliphaticSymbolAtom
org.openscience.cdk.isomorphism.matchers.smarts.
AnyAtom
org.openscience.cdk.isomorphism.matchers.smarts.
AromaticAtom
org.openscience.cdk.isomorphism.matchers.smarts.
AromaticSymbolAtom
org.openscience.cdk.isomorphism.matchers.smarts.
AtomicNumberAtom
org.openscience.cdk.isomorphism.matchers.smarts.
ChiralityAtom
org.openscience.cdk.isomorphism.matchers.smarts.
ConnectionCountAtom
org.openscience.cdk.isomorphism.matchers.smarts.
DegreeAtom
org.openscience.cdk.isomorphism.matchers.smarts.
ExplicitConnectionAtom
org.openscience.cdk.isomorphism.matchers.smarts.
FormalChargeAtom
org.openscience.cdk.isomorphism.matchers.smarts.
HybridizationNumberAtom
org.openscience.cdk.isomorphism.matchers.smarts.
HydrogenAtom
org.openscience.cdk.isomorphism.matchers.smarts.
ImplicitHCountAtom
org.openscience.cdk.isomorphism.matchers.smarts.
LogicalOperatorAtom
org.openscience.cdk.isomorphism.matchers.smarts.
MassAtom
org.openscience.cdk.isomorphism.matchers.smarts.
NonCHHeavyAtom
org.openscience.cdk.isomorphism.matchers.smarts.
PeriodicGroupNumberAtom
org.openscience.cdk.isomorphism.matchers.smarts.
RecursiveSmartsAtom
org.openscience.cdk.isomorphism.matchers.smarts.
RingAtom
org.openscience.cdk.isomorphism.matchers.smarts.
RingIdentifierAtom
org.openscience.cdk.isomorphism.matchers.smarts.
RingMembershipAtom
org.openscience.cdk.isomorphism.matchers.smarts.
SmallestRingAtom
org.openscience.cdk.isomorphism.matchers.smarts.
TotalConnectionAtom
org.openscience.cdk.isomorphism.matchers.smarts.
TotalHCountAtom
org.openscience.cdk.isomorphism.matchers.smarts.
TotalRingConnectionAtom
org.openscience.cdk.isomorphism.matchers.smarts.
TotalValencyAtom
org.openscience.cdk.isomorphism.matchers.
SymbolSetQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.isomorphism.matchers.
SymbolAndChargeQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.isomorphism.matchers.
SymbolChargeIDQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.isomorphism.matchers.
SymbolQueryAtom
(implements org.openscience.cdk.isomorphism.matchers.
IQueryAtom
)
org.openscience.cdk.debug.
DebugAtomType
(implements org.openscience.cdk.interfaces.
IAtomType
)
org.openscience.cdk.nonotify.
NNAtomType
org.openscience.cdk.debug.
DebugIsotope
(implements org.openscience.cdk.interfaces.
IIsotope
)
org.openscience.cdk.nonotify.
NNIsotope
org.openscience.cdk.nonotify.
NNElement
org.openscience.cdk.
Mapping
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMapping
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugMapping
(implements org.openscience.cdk.interfaces.
IMapping
)
org.openscience.cdk.nonotify.
NNMapping
org.openscience.cdk.nonotify.
NNChemObject
org.openscience.cdk.protein.data.
PDBStructure
(implements org.openscience.cdk.interfaces.
IPDBStructure
)
org.openscience.cdk.debug.
DebugPDBStructure
org.openscience.cdk.nonotify.
NNPDBStructure
org.openscience.cdk.
Reaction
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IReaction
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugReaction
(implements org.openscience.cdk.interfaces.
IReaction
)
org.openscience.cdk.nonotify.
NNReaction
org.openscience.cdk.
ReactionSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObjectListener
, org.openscience.cdk.interfaces.
IReactionSet
, java.io.
Serializable
)
org.openscience.cdk.debug.
DebugReactionSet
(implements org.openscience.cdk.interfaces.
IReactionSet
)
org.openscience.cdk.nonotify.
NNReactionSet
org.openscience.cdk.reaction.
ReactionChain
org.openscience.cdk.
ReactionScheme
(implements org.openscience.cdk.interfaces.
IReactionScheme
)
org.openscience.cdk.debug.
DebugReactionScheme
(implements org.openscience.cdk.interfaces.
IReactionScheme
)
org.openscience.cdk.nonotify.
NNReactionScheme
org.openscience.cdk.isomorphism.matchers.
RGroupQuery
(implements org.openscience.cdk.interfaces.
IChemObject
, org.openscience.cdk.isomorphism.matchers.
IRGroupQuery
, java.io.
Serializable
)
org.openscience.cdk.silent.
ChemObject
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObject
, java.io.
Serializable
)
org.openscience.cdk.silent.
AtomContainer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomContainer
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.silent.
Crystal
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ICrystal
, java.io.
Serializable
)
org.openscience.cdk.silent.
Molecule
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMolecule
, java.io.
Serializable
)
org.openscience.cdk.silent.
Polymer
(implements org.openscience.cdk.interfaces.
IPolymer
, java.io.
Serializable
)
org.openscience.cdk.silent.
BioPolymer
(implements org.openscience.cdk.interfaces.
IBioPolymer
, java.io.
Serializable
)
org.openscience.cdk.silent.
PDBPolymer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBPolymer
)
org.openscience.cdk.silent.
Monomer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMonomer
, java.io.
Serializable
)
org.openscience.cdk.silent.
AminoAcid
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAminoAcid
, java.io.
Serializable
)
org.openscience.cdk.silent.
PDBMonomer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBMonomer
)
org.openscience.cdk.silent.
Ring
(implements org.openscience.cdk.interfaces.
IRing
, java.io.
Serializable
)
org.openscience.cdk.silent.
Strand
(implements org.openscience.cdk.interfaces.
IStrand
, java.io.
Serializable
)
org.openscience.cdk.silent.
AtomContainerSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomContainerSet
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.silent.
MoleculeSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMoleculeSet
)
org.openscience.cdk.silent.
RingSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IRingSet
, java.io.
Serializable
)
org.openscience.cdk.silent.
ChemFile
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemFile
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.silent.
ChemModel
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemModel
, org.openscience.cdk.interfaces.
IChemObjectListener
, java.io.
Serializable
)
org.openscience.cdk.silent.
ChemSequence
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObjectListener
, org.openscience.cdk.interfaces.
IChemSequence
, java.io.
Serializable
)
org.openscience.cdk.silent.
ElectronContainer
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IElectronContainer
, java.io.
Serializable
)
org.openscience.cdk.silent.
Bond
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IBond
, java.io.
Serializable
)
org.openscience.cdk.silent.
LonePair
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ILonePair
, java.io.
Serializable
)
org.openscience.cdk.silent.
SingleElectron
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
ISingleElectron
, java.io.
Serializable
)
org.openscience.cdk.silent.
Element
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IElement
, java.io.
Serializable
)
org.openscience.cdk.silent.
Isotope
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IIsotope
, java.io.
Serializable
)
org.openscience.cdk.silent.
AtomType
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtomType
, java.io.
Serializable
)
org.openscience.cdk.silent.
Atom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IAtom
, java.io.
Serializable
)
org.openscience.cdk.silent.
PDBAtom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPDBAtom
)
org.openscience.cdk.silent.
PseudoAtom
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IPseudoAtom
, java.io.
Serializable
)
org.openscience.cdk.silent.
FragmentAtom
(implements org.openscience.cdk.interfaces.
IFragmentAtom
)
org.openscience.cdk.silent.
Mapping
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMapping
, java.io.
Serializable
)
org.openscience.cdk.silent.
PDBStructure
(implements org.openscience.cdk.interfaces.
IPDBStructure
)
org.openscience.cdk.silent.
Reaction
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IReaction
, java.io.
Serializable
)
org.openscience.cdk.silent.
ReactionSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IChemObjectListener
, org.openscience.cdk.interfaces.
IReactionSet
, java.io.
Serializable
)
org.openscience.cdk.silent.
ReactionScheme
(implements org.openscience.cdk.interfaces.
IReactionScheme
)
org.openscience.cdk.tools.diff.
ChemObjectDiff
org.openscience.cdk.tools.manipulator.
ChemSequenceManipulator
org.openscience.cdk.io.formats.
ChemtoolFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.qsar.descriptors.molecular.
ChiChainDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
ChiClusterDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
ChiPathClusterDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
ChiPathDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
CIFFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.geometry.cip.rules.
CIPLigandRule
(implements org.openscience.cdk.geometry.cip.rules.
ISequenceSubRule
<ILigand>)
org.openscience.cdk.geometry.cip.
CIPTool
org.openscience.cdk.math.qm.
ClosedShellJob
org.openscience.cdk.io.cml.
CMLCoreModule
(implements org.openscience.cdk.io.cml.
ICMLModule
)
org.openscience.cdk.io.cml.
CDKConvention
org.openscience.cdk.io.cml.
CMLReactionModule
org.openscience.cdk.io.cml.
JMOLANIMATIONConvention
org.openscience.cdk.io.cml.
MDLMolConvention
org.openscience.cdk.io.cml.
MDMoleculeConvention
org.openscience.cdk.io.cml.
PDBConvention
org.openscience.cdk.io.cml.
PMPConvention
org.openscience.cdk.io.cml.
QSARConvention
org.openscience.cdk.io.cml.
CMLErrorHandler
(implements org.xml.sax.
ErrorHandler
)
org.openscience.cdk.io.formats.
CMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.cml.
CMLResolver
(implements org.xml.sax.
EntityResolver
)
org.openscience.cdk.io.formats.
CMLRSSFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.cml.
CMLStack
org.openscience.cdk.math.
Complex
java.awt.
Component
(implements java.awt.image.
ImageObserver
, java.awt.
MenuContainer
, java.io.
Serializable
)
java.awt.
Container
javax.swing.
JComponent
(implements java.io.
Serializable
)
javax.swing.
JPopupMenu
(implements javax.accessibility.
Accessible
, javax.swing.
MenuElement
)
org.openscience.cdk.controller.
CDKPopupMenu
org.openscience.cdk.
ConformerContainer
(implements java.util.
List
<E>)
org.openscience.cdk.graph.invariant.
ConjugatedPiSystemsDetector
org.openscience.cdk.graph.matrix.
ConnectionMatrix
(implements org.openscience.cdk.graph.matrix.
IGraphMatrix
)
org.openscience.cdk.graph.
ConnectivityChecker
org.openscience.cdk.libio.cml.
Convertor
org.openscience.cdk.libio.jena.
Convertor
org.openscience.cdk.qsar.descriptors.atomic.
CovalentRadiusDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.renderer.color.
CPKAtomColors
(implements org.openscience.cdk.renderer.color.
IAtomColorer
, java.io.
Serializable
)
org.openscience.cdk.qsar.descriptors.molecular.
CPSADescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
CRK2DFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
CRK3DFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.structgen.stochastic.operator.
CrossoverMachine
org.openscience.cdk.geometry.
CrystalGeometryTools
org.openscience.cdk.io.formats.
CrystClustFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
CTXFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.ringsearch.cyclebasis.
CycleBasis
org.openscience.cdk.io.formats.
DaltonFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.tools.
DataFeatures
org.openscience.cdk.tools.
DataFeaturesTool
org.openscience.cdk.tools.
DeAromatizationTool
org.openscience.cdk.debug.
DebugChemObjectBuilder
(implements org.openscience.cdk.interfaces.
IChemObjectBuilder
)
org.openscience.cdk.smiles.
DeduceBondSystemTool
org.openscience.cdk.smsd.algorithm.matchers.
DefaultBondMatcher
(implements org.openscience.cdk.smsd.algorithm.matchers.
BondMatcher
)
org.openscience.cdk.
DefaultChemObjectBuilder
(implements org.openscience.cdk.interfaces.
IChemObjectBuilder
)
org.openscience.cdk.io.
DefaultChemObjectReader
(implements org.openscience.cdk.io.
ISimpleChemObjectReader
)
org.openscience.cdk.io.rdf.
CDKOWLReader
org.openscience.cdk.io.
CIFReader
org.openscience.cdk.io.
CMLReader
org.openscience.cdk.io.
CrystClustReader
org.openscience.cdk.io.
CTXReader
org.openscience.cdk.io.
GamessReader
org.openscience.cdk.io.
Gaussian03Reader
org.openscience.cdk.io.
Gaussian98Reader
org.openscience.cdk.io.
GhemicalMMReader
org.openscience.cdk.io.
HINReader
org.openscience.cdk.io.
INChIPlainTextReader
org.openscience.cdk.io.
INChIReader
org.openscience.cdk.io.
MDLReader
org.openscience.cdk.io.
MDLRXNReader
org.openscience.cdk.io.
MDLRXNV2000Reader
org.openscience.cdk.io.
MDLRXNV3000Reader
org.openscience.cdk.io.
MDLV2000Reader
org.openscience.cdk.io.
MDLV3000Reader
org.openscience.cdk.io.
Mol2Reader
org.openscience.cdk.io.
MoSSOutputReader
org.openscience.cdk.io.
PCCompoundASNReader
org.openscience.cdk.io.
PCCompoundXMLReader
org.openscience.cdk.io.
PCSubstanceXMLReader
org.openscience.cdk.io.
PDBReader
org.openscience.cdk.io.
PMPReader
org.openscience.cdk.io.
RGroupQueryReader
org.openscience.cdk.io.
ShelXReader
org.openscience.cdk.io.
SMILESReader
org.openscience.cdk.io.
VASPReader
org.openscience.cdk.io.
XYZReader
org.openscience.cdk.io.
ZMatrixReader
org.openscience.cdk.io.
DefaultChemObjectWriter
(implements org.openscience.cdk.io.
IChemObjectWriter
)
org.openscience.cdk.io.rdf.
CDKOWLWriter
org.openscience.cdk.io.
CDKSourceCodeWriter
org.openscience.cdk.io.
CMLWriter
org.openscience.cdk.io.
CrystClustWriter
org.openscience.cdk.io.program.
GaussianInputWriter
org.openscience.cdk.io.
HINWriter
org.openscience.cdk.io.
MDLRXNWriter
org.openscience.cdk.io.
MDLV2000Writer
org.openscience.cdk.io.
Mol2Writer
org.openscience.cdk.io.
PDBWriter
org.openscience.cdk.io.
RGroupQueryWriter
org.openscience.cdk.io.
RssWriter
org.openscience.cdk.io.
SDFWriter
org.openscience.cdk.io.
ShelXWriter
org.openscience.cdk.io.
SMILESWriter
org.openscience.cdk.io.
XYZWriter
org.openscience.cdk.io.iterator.event.
DefaultEventChemObjectReader
(implements org.openscience.cdk.io.iterator.event.
IEventChemObjectReader
)
org.openscience.cdk.io.iterator.event.
EventCMLReader
org.xml.sax.helpers.
DefaultHandler
(implements org.xml.sax.
ContentHandler
, org.xml.sax.
DTDHandler
, org.xml.sax.
EntityResolver
, org.xml.sax.
ErrorHandler
)
org.openscience.cdk.config.atomtypes.
AtomTypeHandler
org.openscience.cdk.io.cml.
CMLHandler
org.openscience.cdk.io.iterator.event.
EventCMLHandler
org.openscience.cdk.dict.
DictionaryHandler
org.openscience.cdk.io.inchi.
INChIHandler
org.openscience.cdk.config.isotopes.
IsotopeHandler
org.openscience.cdk.config.atomtypes.
OWLAtomTypeHandler
org.openscience.cdk.config.atomtypes.
OWLAtomTypeMappingHandler
org.openscience.cdk.io.iterator.
DefaultIteratingChemObjectReader
<T> (implements org.openscience.cdk.io.iterator.
IIteratingChemObjectReader
<T>)
org.openscience.cdk.io.iterator.
IteratingMDLReader
(implements org.openscience.cdk.io.listener.
IChemObjectIOListener
)
org.openscience.cdk.io.iterator.
IteratingPCCompoundASNReader
org.openscience.cdk.io.iterator.
IteratingPCCompoundXMLReader
org.openscience.cdk.io.iterator.
IteratingPCSubstancesXMLReader
org.openscience.cdk.io.iterator.
IteratingSMILESReader
org.openscience.cdk.smsd.algorithm.matchers.
DefaultMatcher
org.openscience.cdk.smsd.algorithm.matchers.
DefaultMCSPlusAtomMatcher
(implements org.openscience.cdk.smsd.algorithm.matchers.
AtomMatcher
)
org.openscience.cdk.io.random.
DefaultRandomAccessChemObjectReader
(implements org.openscience.cdk.io.random.
IRandomAccessChemObjectReader
<T>)
org.openscience.cdk.io.random.
RandomAccessReader
(implements org.openscience.cdk.io.random.
IRandomAccessChemObjectReader
<T>)
org.openscience.cdk.io.random.
RandomAccessSDFReader
org.openscience.cdk.smsd.algorithm.matchers.
DefaultRGraphAtomMatcher
(implements org.openscience.cdk.smsd.algorithm.matchers.
AtomMatcher
)
org.openscience.cdk.smsd.algorithm.matchers.
DefaultVFAtomMatcher
(implements org.openscience.cdk.smsd.algorithm.matchers.
VFAtomMatcher
)
org.openscience.cdk.smsd.algorithm.matchers.
DefaultVFBondMatcher
(implements org.openscience.cdk.smsd.algorithm.matchers.
VFBondMatcher
)
org.openscience.cdk.qsar.
DescriptorEngine
org.openscience.cdk.qsar.
DescriptorSpecification
(implements org.openscience.cdk.
IImplementationSpecification
, java.io.
Serializable
)
org.openscience.cdk.qsar.
DescriptorValue
(implements java.io.
Serializable
)
org.openscience.cdk.dict.
Dictionary
org.openscience.cdk.dict.
OWLFile
org.openscience.cdk.dict.
OWLReact
org.openscience.cdk.dict.
DictionaryDatabase
org.openscience.cdk.dict.
DictRef
(implements java.lang.
Cloneable
, java.io.
Serializable
)
org.openscience.cdk.similarity.
DistanceMoment
org.openscience.cdk.qsar.descriptors.atomic.
DistanceToAtomDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.io.formats.
DMol3Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
DOCK5Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.qsar.result.
DoubleArrayResultType
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.result.
DoubleArrayResult
org.openscience.cdk.aromaticity.
DoubleBondAcceptingAromaticityDetector
org.openscience.cdk.stereo.
DoubleBondStereochemistry
(implements org.openscience.cdk.interfaces.
IDoubleBondStereochemistry
)
org.openscience.cdk.tools.diff.tree.
DoubleDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.qsar.result.
DoubleResult
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.result.
DoubleResultType
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.descriptors.molecular.
EccentricConnectivityIndexDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.smsd.algorithm.vflib.builder.
EdgeBuilder
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IEdge
)
org.openscience.cdk.qsar.descriptors.atomic.
EffectiveAtomPolarizabilityDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.tools.diff.
ElectronContainerDiff
org.openscience.cdk.charges.
Electronegativity
org.openscience.cdk.tools.
ElementComparator
(implements java.util.
Comparator
<T>)
org.openscience.cdk.tools.diff.
ElementDiff
org.openscience.cdk.renderer.elements.
ElementGroup
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
, java.lang.
Iterable
<T>)
org.openscience.cdk.formula.rules.
ElementRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.config.
Elements
org.openscience.cdk.dict.
Entry
org.openscience.cdk.dict.
EntryReact
org.openscience.cdk.graph.invariant.
EquivalentClassPartitioner
org.openscience.cdk.atomtype.
EStateAtomTypeMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.fingerprint.
EStateFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.config.fragments.
EStateFragments
java.util.
EventObject
(implements java.io.
Serializable
)
org.openscience.cdk.event.
ChemObjectChangeEvent
(implements org.openscience.cdk.interfaces.
IChemObjectChangeEvent
)
org.openscience.cdk.io.
ReaderEvent
org.openscience.cdk.smsd.algorithm.mcsplus.
ExactMapping
org.openscience.cdk.fragment.
ExhaustiveFragmenter
(implements org.openscience.cdk.fragment.
IFragmenter
)
org.openscience.cdk.fingerprint.
ExtendedFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.io.formats.
FenskeHall_ZMatrixFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.ringsearch.
FiguerasSSSRFinder
org.openscience.cdk.smsd.helper.
FinalMappings
(implements org.openscience.cdk.smsd.interfaces.
IFinalMapping
)
org.openscience.cdk.fingerprint.
Fingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.fingerprint.
GraphOnlyFingerprinter
org.openscience.cdk.fingerprint.
FingerprinterTool
org.openscience.cdk.io.formats.
FingerprintFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.smiles.
FixBondOrdersTool
org.openscience.cdk.qsar.descriptors.molecular.
FMFDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.modeling.builder3d.
ForceFieldConfigurator
org.openscience.cdk.io.
FormatFactory
org.openscience.cdk.tools.
FormatStringBuffer
org.openscience.cdk.math.
FortranFormat
org.openscience.cdk.math.qm.
FourierGridBasis
(implements org.openscience.cdk.math.qm.
IBasis
)
org.openscience.cdk.qsar.descriptors.molecular.
FragmentComplexityDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.fragment.
FragmentUtils
org.openscience.cdk.io.formats.
GamessFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.charges.
GasteigerMarsiliPartialCharges
(implements org.openscience.cdk.charges.
IChargeCalculator
)
org.openscience.cdk.charges.
GasteigerPEPEPartialCharges
(implements org.openscience.cdk.charges.
IChargeCalculator
)
org.openscience.cdk.io.formats.
Gaussian03Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
Gaussian90Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
Gaussian92Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
Gaussian94Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
Gaussian95Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
Gaussian98Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
GaussianInputFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.math.qm.
GaussiansBasis
(implements org.openscience.cdk.math.qm.
IBasis
)
org.openscience.cdk.math.qm.
SimpleBasisSet
org.openscience.cdk.renderer.elements.
GeneralPath
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.smsd.algorithm.mcsplus.
GenerateCompatibilityGraph
org.openscience.cdk.geometry.
GeometryTools
org.openscience.cdk.io.formats.
GhemicalMMFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
GhemicalSPMFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.graph.invariant.
GIMatrix
org.openscience.cdk.renderer.
GraphRendererModel
org.openscience.cdk.qsar.descriptors.molecular.
GravitationalIndexDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.tools.
GridGenerator
org.openscience.cdk.io.formats.
GROMOS96Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.smsd.ring.
HanserRingFinder
(implements org.openscience.cdk.smsd.ring.
RingFinder
)
org.openscience.cdk.qsar.descriptors.molecular.
HBondAcceptorCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
HBondDonorCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.reaction.mechanism.
HeterolyticCleavageMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.io.formats.
HINFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.reaction.mechanism.
HomolyticCleavageMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.tools.
HOSECodeAnalyser
org.openscience.cdk.tools.
HOSECodeGenerator
(implements java.io.
Serializable
)
org.openscience.cdk.graph.invariant.
HuLuIndexTool
org.openscience.cdk.fingerprint.
HybridizationFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.qsar.descriptors.molecular.
HybridizationRatioDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.layout.
HydrogenPlacer
org.openscience.cdk.tools.
IDCreator
org.openscience.cdk.math.
IMatrix
org.openscience.cdk.io.inchi.
INChIContentProcessorTool
org.openscience.cdk.io.formats.
INChIFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.inchi.
InChIGenerator
org.openscience.cdk.inchi.
InChIGeneratorFactory
org.openscience.cdk.graph.invariant.
InChINumbersTools
org.openscience.cdk.io.formats.
INChIPlainTextFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.tautomers.
InChITautomerGenerator
org.openscience.cdk.inchi.
InChIToStructure
org.openscience.cdk.qsar.descriptors.atomic.
InductiveAtomicHardnessDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
InductiveAtomicSoftnessDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.charges.
InductivePartialCharges
(implements org.openscience.cdk.charges.
IChargeCalculator
)
org.openscience.cdk.qsar.result.
IntegerArrayResultType
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.result.
IntegerArrayResult
org.openscience.cdk.tools.diff.tree.
IntegerDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.qsar.result.
IntegerResult
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.qsar.result.
IntegerResultType
(implements org.openscience.cdk.qsar.result.
IDescriptorResult
)
org.openscience.cdk.smiles.
InvPair
(implements java.io.
Serializable
)
org.openscience.cdk.tools.
IonizationPotentialTool
org.openscience.cdk.io.setting.
IOSetting
org.openscience.cdk.io.setting.
BooleanIOSetting
org.openscience.cdk.io.setting.
IntegerIOSetting
org.openscience.cdk.io.setting.
OptionIOSetting
org.openscience.cdk.io.setting.
StringIOSetting
org.openscience.cdk.qsar.descriptors.molecular.
IPMolecularLearningDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.templates.saturatedhydrocarbons.
IsoAlkanes
org.openscience.cdk.isomorphism.
IsomorphismTester
(implements java.io.
Serializable
)
org.openscience.cdk.formula.
IsotopeContainer
org.openscience.cdk.tools.diff.
IsotopeDiff
org.openscience.cdk.config.
IsotopeFactory
org.openscience.cdk.formula.
IsotopePattern
org.openscience.cdk.formula.
IsotopePatternGenerator
org.openscience.cdk.formula.
IsotopePatternManipulator
org.openscience.cdk.formula.rules.
IsotopePatternRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.formula.
IsotopePatternSimilarity
org.openscience.cdk.config.isotopes.
IsotopeReader
org.openscience.cdk.qsar.descriptors.atomic.
IsProtonInAromaticSystemDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
IsProtonInConjugatedPiSystemDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.io.iterator.
IteratingMDLConformerReader
(implements java.util.
Iterator
<E>)
org.openscience.cdk.math.
IVector
org.openscience.cdk.io.formats.
JaguarFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.smiles.smarts.parser.
JJTSMARTSParserState
org.openscience.cdk.io.formats.
JMEFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.geometry.alignment.
KabschAlignment
org.openscience.cdk.qsar.descriptors.molecular.
KappaShapeIndicesDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
KierHallSmartsDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.smsd.helper.
LabelContainer
org.openscience.cdk.qsar.descriptors.molecular.
LargestChainDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
LargestPiSystemDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
LengthOverBreadthDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.geometry.cip.
Ligand
(implements org.openscience.cdk.geometry.cip.
ILigand
)
org.openscience.cdk.geometry.cip.
ImplicitHydrogenLigand
org.openscience.cdk.renderer.elements.
LineElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.renderer.elements.
WedgeLineElement
org.openscience.cdk.tools.
LoggingTool
(implements org.openscience.cdk.tools.
ILoggingTool
)
org.openscience.cdk.tools.
LoggingToolFactory
org.openscience.cdk.tools.diff.
LonePairDiff
org.openscience.cdk.tools.
LonePairElectronChecker
org.openscience.cdk.renderer.generators.
LonePairGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.qsar.descriptors.molecular.
LongestAliphaticChainDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.fingerprint.
MACCSFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.io.formats.
MacroModelFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.qsar.descriptors.molecular.
MannholdLogPDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.renderer.generators.
MappingGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.formula.
MassToFormulaTool
org.openscience.cdk.smsd.algorithm.vflib.map.
Match
org.openscience.cdk.math.
MathTools
org.openscience.cdk.math.
Matrix
org.openscience.cdk.smsd.algorithm.mcgregor.
McGregor
org.openscience.cdk.smsd.algorithm.mcgregor.
McGregorChecks
org.openscience.cdk.smsd.algorithm.mcgregor.
McgregorHelper
org.openscience.cdk.smsd.algorithm.mcsplus.
MCSPlus
org.openscience.cdk.qsar.descriptors.molecular.
MDEDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
MDLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MDLRXNFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MDLRXNV3000Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MDLV2000Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MDLV3000Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.libio.cml.
MDMoleculeCustomizer
(implements org.openscience.cdk.libio.cml.
ICMLCustomizer
)
org.openscience.cdk.graph.
MinimalPathIterator
(implements java.util.
Iterator
<E>)
org.openscience.cdk.atomtype.
MM2AtomTypeMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.modeling.builder3d.
MM2BasedAtomTypePattern
org.openscience.cdk.modeling.builder3d.
MM2BasedParameterSetReader
org.openscience.cdk.formula.rules.
MMElementRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.atomtype.
MMFF94AtomTypeMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.modeling.builder3d.
MMFF94BasedAtomTypePattern
org.openscience.cdk.modeling.builder3d.
MMFF94BasedParameterSetReader
org.openscience.cdk.modeling.builder3d.
MMFF94ParametersCall
org.openscience.cdk.charges.
MMFF94PartialCharges
(implements org.openscience.cdk.charges.
IChargeCalculator
)
org.openscience.cdk.io.formats.
MMODFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.modeling.builder3d.
ModelBuilder3D
org.openscience.cdk.io.formats.
Mol2Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.formula.
MolecularFormula
(implements org.openscience.cdk.interfaces.
IMolecularFormula
)
org.openscience.cdk.debug.
DebugMolecularFormula
(implements org.openscience.cdk.interfaces.
IMolecularFormula
)
org.openscience.cdk.nonotify.
NNMolecularFormula
org.openscience.cdk.silent.
MolecularFormula
(implements org.openscience.cdk.interfaces.
IMolecularFormula
)
org.openscience.cdk.formula.
MolecularFormulaChecker
org.openscience.cdk.tools.manipulator.
MolecularFormulaManipulator
org.openscience.cdk.formula.
MolecularFormulaRange
(implements java.lang.
Cloneable
)
org.openscience.cdk.tools.manipulator.
MolecularFormulaRangeManipulator
org.openscience.cdk.formula.
MolecularFormulaSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMolecularFormulaSet
, java.lang.
Iterable
<T>)
org.openscience.cdk.debug.
DebugMolecularFormulaSet
(implements org.openscience.cdk.interfaces.
IMolecularFormulaSet
)
org.openscience.cdk.nonotify.
NNMolecularFormulaSet
org.openscience.cdk.silent.
MolecularFormulaSet
(implements java.lang.
Cloneable
, org.openscience.cdk.interfaces.
IMolecularFormulaSet
, java.lang.
Iterable
<T>)
org.openscience.cdk.tools.manipulator.
MolecularFormulaSetManipulator
org.openscience.cdk.iupac.parser.
MoleculeBuilder
org.openscience.cdk.templates.
MoleculeFactory
org.openscience.cdk.tools.features.
MoleculeFeaturesTool
org.openscience.cdk.graph.
MoleculeGraphs
org.openscience.cdk.smsd.tools.
MoleculeSanityCheck
org.openscience.cdk.tools.manipulator.
MoleculeSetManipulator
org.openscience.cdk.smsd.labelling.
MoleculeSignatureLabellingAdaptor
(implements org.openscience.cdk.smsd.labelling.
ICanonicalMoleculeLabeller
)
org.openscience.cdk.smsd.tools.
MolHandler
org.openscience.cdk.qsar.descriptors.molecular.
MomentOfInertiaDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
MOPAC2002Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MOPAC7Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MOPAC93Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MOPAC97Format
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.graph.invariant.
MorganNumbersTools
org.openscience.cdk.io.formats.
MoSSOutputFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
MPQCFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.fragment.
MurckoFragmenter
(implements org.openscience.cdk.fragment.
IFragmenter
)
org.openscience.cdk.geometry.surface.
NeighborList
org.openscience.cdk.formula.rules.
NitrogenRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.smsd.algorithm.vflib.builder.
NodeBuilder
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
INode
)
org.openscience.cdk.iupac.parser.
NomParser
(implements org.openscience.cdk.iupac.parser.
NomParserConstants
)
org.openscience.cdk.iupac.parser.
NomParserTokenManager
(implements org.openscience.cdk.iupac.parser.
NomParserConstants
)
org.openscience.cdk.nonotify.
NoNotificationChemObjectBuilder
(implements org.openscience.cdk.interfaces.
IChemObjectBuilder
)
org.openscience.cdk.normalize.
Normalizer
org.openscience.cdk.geometry.surface.
NumericalSurface
org.openscience.cdk.io.formats.
NWChemFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.math.qm.
OneElectronJob
org.openscience.cdk.signature.
Orbit
(implements java.lang.
Cloneable
, java.lang.
Iterable
<T>)
org.openscience.cdk.math.qm.
Orbitals
org.openscience.cdk.renderer.elements.
OvalElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.renderer.elements.
RingElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.layout.
OverlapResolver
org.openscience.cdk.layout.
OverlapResolver.OverlapPair
org.openscience.cdk.config.atomtypes.
OWLAtomTypeMappingReader
org.openscience.cdk.config.atomtypes.
OWLAtomTypeReader
org.openscience.cdk.config.
OWLBasedAtomTypeConfigurator
(implements org.openscience.cdk.config.
IAtomTypeConfigurator
)
org.openscience.cdk.reaction.type.parameters.
ParameterReact
(implements org.openscience.cdk.reaction.type.parameters.
IParameterReact
)
org.openscience.cdk.reaction.type.parameters.
SetReactionCenter
org.openscience.cdk.renderer.color.
PartialAtomicChargeColors
(implements org.openscience.cdk.renderer.color.
IAtomColorer
)
org.openscience.cdk.structgen.stochastic.
PartialFilledStructureMerger
org.openscience.cdk.renderer.elements.path.
PathBuilder
org.openscience.cdk.smsd.ring.
PathEdge
org.openscience.cdk.renderer.elements.
PathElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.renderer.elements.path.
PathElement
org.openscience.cdk.renderer.elements.path.
Close
org.openscience.cdk.renderer.elements.path.
CubicTo
org.openscience.cdk.renderer.elements.path.
LineTo
org.openscience.cdk.renderer.elements.path.
MoveTo
org.openscience.cdk.renderer.elements.path.
QuadTo
org.openscience.cdk.smsd.ring.
PathGraph
org.openscience.cdk.graph.
PathTools
org.openscience.cdk.io.formats.
PCModelFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.libio.cml.
PDBAtomCustomizer
(implements org.openscience.cdk.libio.cml.
ICMLCustomizer
)
org.openscience.cdk.io.formats.
PDBFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
PDBMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.tools.periodictable.
PeriodicTable
org.openscience.cdk.qsar.descriptors.atomic.
PeriodicTablePositionDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.smsd.labelling.
Permutor
org.openscience.cdk.smsd.labelling.
AtomContainerAtomPermutor
(implements java.util.
Iterator
<E>)
org.openscience.cdk.qsar.descriptors.molecular.
PetitjeanNumberDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
PetitjeanShapeIndexDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.pharmacophore.
PharmacophoreMatcher
org.openscience.cdk.pharmacophore.
PharmacophoreUtils
org.openscience.cdk.
PhysicalConstants
org.openscience.cdk.qsar.descriptors.atompair.
PiContactDetectionDescriptor
(implements org.openscience.cdk.qsar.
IAtomPairDescriptor
)
org.openscience.cdk.charges.
PiElectronegativity
org.openscience.cdk.qsar.descriptors.atomic.
PiElectronegativityDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.io.formats.
PMPFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.graph.rebond.
Point
(implements org.openscience.cdk.graph.rebond.
Bspt.Tuple
)
org.openscience.cdk.charges.
Polarizability
org.openscience.cdk.smsd.filters.
PostFilter
org.openscience.cdk.io.formats.
POVRayFormat
(implements org.openscience.cdk.io.formats.
IResourceFormat
)
org.openscience.cdk.io.formats.
PQSChemFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.math.
Primes
org.openscience.cdk.validate.
ProblemMarker
org.openscience.cdk.renderer.generators.
ProductsBoxGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.geometry.
Projector
org.openscience.cdk.io.listener.
PropertiesListener
(implements org.openscience.cdk.io.listener.
IReaderListener
, org.openscience.cdk.io.listener.
IWriterListener
)
org.openscience.cdk.tools.
ProteinBuilderTool
org.openscience.cdk.protein.
ProteinPocketFinder
org.openscience.cdk.qsar.descriptors.atomic.
ProtonTotalPartialChargeDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.io.formats.
PubChemASNFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
PubChemCompoundsXMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
PubChemCompoundXMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.fingerprint.
PubchemFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.io.formats.
PubChemFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
PubChemSubstancesASNFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
PubChemSubstancesXMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.formats.
PubChemSubstanceXMLFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.io.pubchemxml.
PubChemXMLHelper
org.openscience.cdk.io.formats.
QChemFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.libio.cml.
QSARCustomizer
(implements org.openscience.cdk.libio.cml.
ICMLCustomizer
)
org.openscience.cdk.math.
Quaternion
org.openscience.cdk.isomorphism.matchers.
QueryAtomContainerCreator
org.openscience.cdk.smsd.algorithm.vflib.query.
QueryCompiler
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IQueryCompiler
)
org.openscience.cdk.smsd.algorithm.mcgregor.
QueryProcessor
org.openscience.cdk.renderer.generators.
RadicalGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.reaction.mechanism.
RadicalSiteIonizationMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.reaction.mechanism.
RadicalSiteRearrangementMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
java.util.
Random
(implements java.io.
Serializable
)
org.openscience.cdk.math.
RandomNumbersTool
org.openscience.cdk.structgen.
RandomGenerator
org.openscience.cdk.renderer.color.
RasmolColors
(implements org.openscience.cdk.renderer.color.
IAtomColorer
, java.io.
Serializable
)
org.openscience.cdk.io.formats.
RawCopyFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.formula.rules.
RDBERule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.formula.rules.
RDBERule.Combinations
org.openscience.cdk.geometry.
RDFCalculator
org.openscience.cdk.qsar.descriptors.atomic.
RDFProtonDescriptor_G3R
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
RDFProtonDescriptor_GDR
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
RDFProtonDescriptor_GHR
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
RDFProtonDescriptor_GHR_topol
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.qsar.descriptors.atomic.
RDFProtonDescriptor_GSR
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.renderer.generators.
ReactantsBoxGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.renderer.generators.
ReactionArrowGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.renderer.generators.
ReactionBoxGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.reaction.
ReactionEngine
org.openscience.cdk.reaction.type.
AdductionProtonLPReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
AdductionProtonPBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
AdductionSodiumLPReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
CarbonylEliminationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
ElectronImpactNBEReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
ElectronImpactPDBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
ElectronImpactSDBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
HeterolyticCleavagePBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
HeterolyticCleavageSBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
HomolyticCleavageReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
HyperconjugationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
PiBondingMovementReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalChargeSiteInitiationHReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalChargeSiteInitiationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteHrAlphaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteHrBetaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteHrDeltaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteHrGammaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteInitiationHReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteInitiationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteRrAlphaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteRrBetaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteRrDeltaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RadicalSiteRrGammaReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RearrangementAnionReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RearrangementCationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RearrangementLonePairReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
RearrangementRadicalReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
SharingAnionReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
SharingChargeDBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
SharingChargeSBReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
SharingLonePairReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.reaction.type.
TautomerizationReaction
(implements org.openscience.cdk.reaction.
IReactionProcess
)
org.openscience.cdk.tools.manipulator.
ReactionManipulator
org.openscience.cdk.renderer.generators.
ReactionPlusGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.renderer.generators.
ReactionSceneGenerator
(implements org.openscience.cdk.renderer.generators.
IGenerator
<T>)
org.openscience.cdk.tools.manipulator.
ReactionSchemeManipulator
org.openscience.cdk.tools.manipulator.
ReactionSetManipulator
org.openscience.cdk.reaction.
ReactionSpecification
(implements org.openscience.cdk.
IImplementationSpecification
)
org.openscience.cdk.io.
ReaderFactory
org.openscience.cdk.reaction.mechanism.
RearrangementChargeMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.graph.rebond.
RebondTool
org.openscience.cdk.renderer.elements.
RectangleElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.reaction.mechanism.
RemovingSEofBMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.reaction.mechanism.
RemovingSEofNBMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.renderer.
RendererModel
(implements java.lang.
Cloneable
, java.io.
Serializable
)
org.openscience.cdk.isomorphism.mcss.
RGraph
org.openscience.cdk.isomorphism.matchers.
RGroup
org.openscience.cdk.isomorphism.matchers.
RGroupList
org.openscience.cdk.io.formats.
RGroupQueryFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.smsd.ring.
RingFilter
org.openscience.cdk.tools.manipulator.
RingManipulator
org.openscience.cdk.ringsearch.
RingPartitioner
org.openscience.cdk.layout.
RingPlacer
org.openscience.cdk.tools.manipulator.
RingSetManipulator
org.openscience.cdk.tools.manipulator.
RingSizeComparator
(implements java.util.
Comparator
<T>)
org.openscience.cdk.isomorphism.mcss.
RMap
org.openscience.cdk.isomorphism.mcss.
RNode
org.openscience.cdk.qsar.descriptors.molecular.
RotatableBondsCountDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
RuleOfFiveDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.tools.
SaturationChecker
(implements org.openscience.cdk.tools.
IDeduceBondOrderTool
, org.openscience.cdk.tools.
IValencyChecker
)
org.openscience.cdk.io.formats.
SDFFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
nu.xom.Serializer
org.openscience.cdk.io.cml.
CustomSerializer
org.openscience.cdk.reaction.mechanism.
SharingElectronMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.io.formats.
ShelXFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.qsar.descriptors.atomic.
SigmaElectronegativityDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.silent.
SilentChemObjectBuilder
(implements org.openscience.cdk.interfaces.
IChemObjectBuilder
)
org.openscience.cdk.iupac.parser.
SimpleCharStream
org.openscience.cdk.smiles.smarts.parser.
SimpleCharStream
org.openscience.cdk.ringsearch.cyclebasis.
SimpleCycleBasis
org.openscience.cdk.smiles.smarts.parser.
SimpleNode
(implements java.lang.
Cloneable
, org.openscience.cdk.smiles.smarts.parser.
Node
)
org.openscience.cdk.smiles.smarts.parser.
ASTAliphatic
org.openscience.cdk.smiles.smarts.parser.
ASTAnyAtom
org.openscience.cdk.smiles.smarts.parser.
ASTAromatic
org.openscience.cdk.smiles.smarts.parser.
ASTAtom
org.openscience.cdk.smiles.smarts.parser.
ASTAtomicMass
org.openscience.cdk.smiles.smarts.parser.
ASTAtomicNumber
org.openscience.cdk.smiles.smarts.parser.
ASTCharge
org.openscience.cdk.smiles.smarts.parser.
ASTChirality
org.openscience.cdk.smiles.smarts.parser.
ASTElement
org.openscience.cdk.smiles.smarts.parser.
ASTExplicitAtom
org.openscience.cdk.smiles.smarts.parser.
ASTExplicitConnectivity
org.openscience.cdk.smiles.smarts.parser.
ASTExplicitHighAndBond
org.openscience.cdk.smiles.smarts.parser.
ASTExplicitHighAndExpression
org.openscience.cdk.smiles.smarts.parser.
ASTGroup
org.openscience.cdk.smiles.smarts.parser.
ASTHybrdizationNumber
org.openscience.cdk.smiles.smarts.parser.
ASTImplicitHCount
org.openscience.cdk.smiles.smarts.parser.
ASTImplicitHighAndBond
org.openscience.cdk.smiles.smarts.parser.
ASTImplicitHighAndExpression
org.openscience.cdk.smiles.smarts.parser.
ASTLowAndBond
org.openscience.cdk.smiles.smarts.parser.
ASTLowAndExpression
org.openscience.cdk.smiles.smarts.parser.
ASTNonCHHeavyAtom
org.openscience.cdk.smiles.smarts.parser.
ASTNotBond
org.openscience.cdk.smiles.smarts.parser.
ASTNotExpression
org.openscience.cdk.smiles.smarts.parser.
ASTOrBond
org.openscience.cdk.smiles.smarts.parser.
ASTOrExpression
org.openscience.cdk.smiles.smarts.parser.
ASTPeriodicGroupNumber
org.openscience.cdk.smiles.smarts.parser.
ASTPrimitiveAtomExpression
org.openscience.cdk.smiles.smarts.parser.
ASTReaction
org.openscience.cdk.smiles.smarts.parser.
ASTRecursiveSmartsExpression
org.openscience.cdk.smiles.smarts.parser.
ASTRingConnectivity
org.openscience.cdk.smiles.smarts.parser.
ASTRingIdentifier
org.openscience.cdk.smiles.smarts.parser.
ASTRingMembership
org.openscience.cdk.smiles.smarts.parser.
ASTSimpleBond
org.openscience.cdk.smiles.smarts.parser.
ASTSmallestRingSize
org.openscience.cdk.smiles.smarts.parser.
ASTSmarts
org.openscience.cdk.smiles.smarts.parser.
ASTStart
org.openscience.cdk.smiles.smarts.parser.
ASTTotalConnectivity
org.openscience.cdk.smiles.smarts.parser.
ASTTotalHCount
org.openscience.cdk.smiles.smarts.parser.
ASTValence
org.openscience.cdk.tools.diff.
SingleElectronDiff
org.openscience.cdk.smsd.algorithm.single.
SingleMapping
org.openscience.cdk.structgen.
SingleStructureRandomGenerator
org.openscience.cdk.smiles.smarts.parser.visitor.
Smarts2MQLVisitor
(implements org.openscience.cdk.smiles.smarts.parser.
SMARTSParserVisitor
)
org.openscience.cdk.smiles.smarts.parser.visitor.
SmartsDumpVisitor
(implements org.openscience.cdk.smiles.smarts.parser.
SMARTSParserVisitor
)
org.openscience.cdk.io.formats.
SMARTSFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.smiles.smarts.parser.
SMARTSParser
(implements org.openscience.cdk.smiles.smarts.parser.
SMARTSParserConstants
, org.openscience.cdk.smiles.smarts.parser.
SMARTSParserTreeConstants
)
org.openscience.cdk.smiles.smarts.parser.
SMARTSParserTokenManager
(implements org.openscience.cdk.smiles.smarts.parser.
SMARTSParserConstants
)
org.openscience.cdk.smiles.smarts.
SMARTSQueryTool
org.openscience.cdk.smiles.smarts.parser.visitor.
SmartsQueryVisitor
(implements org.openscience.cdk.smiles.smarts.parser.
SMARTSParserVisitor
)
org.openscience.cdk.io.formats.
SMILESFIXFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
SMILESFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.smiles.
SmilesGenerator
org.openscience.cdk.smiles.
SmilesParser
org.openscience.cdk.tools.
SmilesValencyChecker
(implements org.openscience.cdk.tools.
IDeduceBondOrderTool
, org.openscience.cdk.tools.
IValencyChecker
)
org.openscience.cdk.graph.
SpanningTree
org.openscience.cdk.io.formats.
SpartanFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.ringsearch.
SSSRFinder
org.openscience.cdk.charges.
StabilizationCharges
org.openscience.cdk.qsar.descriptors.atomic.
StabilizationPlusChargeDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.fingerprint.
StandardSubstructureSets
org.openscience.cdk.stereo.
StereoTool
org.openscience.cdk.tools.diff.tree.
StringDifference
(implements org.openscience.cdk.tools.diff.tree.
IDifference
)
org.openscience.cdk.atomtype.
StructGenAtomTypeGuesser
(implements org.openscience.cdk.atomtype.
IAtomTypeGuesser
)
org.openscience.cdk.atomtype.
StructGenMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.layout.
StructureDiagramGenerator
org.openscience.cdk.tools.
StructureResonanceGenerator
org.openscience.cdk.fingerprint.
SubstructureFingerprinter
(implements org.openscience.cdk.fingerprint.
IFingerprinter
)
org.openscience.cdk.fingerprint.
KlekotaRothFingerprinter
org.openscience.cdk.io.formats.
SVGFormat
(implements org.openscience.cdk.io.formats.
IResourceFormat
)
org.openscience.cdk.controller.
SwingEventRelay
(implements org.openscience.cdk.controller.
IViewEventRelay
)
org.openscience.cdk.io.listener.
SwingGUIListener
(implements org.openscience.cdk.io.listener.
IReaderListener
, org.openscience.cdk.io.listener.
IWriterListener
)
org.openscience.cdk.controller.
SwingMouseEventRelay
(implements java.awt.event.
MouseListener
, java.awt.event.
MouseMotionListener
)
org.openscience.cdk.tools.
SwissArmyKnife
org.openscience.cdk.atomtype.
SybylAtomTypeMatcher
(implements org.openscience.cdk.atomtype.
IAtomTypeMatcher
)
org.openscience.cdk.io.formats.
SybylDescriptorFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.tools.
SystemOutLoggingTool
(implements org.openscience.cdk.tools.
ILoggingTool
)
org.openscience.cdk.qsar.descriptors.protein.
TaeAminoAcidDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.similarity.
Tanimoto
org.openscience.cdk.smsd.algorithm.mcgregor.
TargetProcessor
org.openscience.cdk.smsd.algorithm.vflib.builder.
TargetProperties
(implements java.io.
Serializable
)
org.openscience.cdk.reaction.mechanism.
TautomerizationMechanism
(implements org.openscience.cdk.reaction.
IReactionMechanism
)
org.openscience.cdk.modeling.builder3d.
TemplateExtractor
org.openscience.cdk.layout.
TemplateHandler
org.openscience.cdk.modeling.builder3d.
TemplateHandler3D
org.openscience.cdk.geometry.surface.
Tessellate
org.openscience.cdk.stereo.
TetrahedralChirality
(implements org.openscience.cdk.interfaces.
ITetrahedralChirality
)
org.openscience.cdk.renderer.elements.
TextElement
(implements org.openscience.cdk.renderer.elements.
IRenderingElement
)
org.openscience.cdk.renderer.elements.
AtomSymbolElement
org.openscience.cdk.renderer.elements.
AtomMassSymbolElement
org.openscience.cdk.renderer.elements.
TextGroupElement
org.openscience.cdk.renderer.elements.
TextGroupElement.Child
org.openscience.cdk.io.listener.
TextGUIListener
(implements org.openscience.cdk.io.listener.
IReaderListener
, org.openscience.cdk.io.listener.
IWriterListener
)
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Error
org.openscience.cdk.exception.
IncorrectUseOfCDKCoreClassError
org.openscience.cdk.iupac.parser.
TokenMgrError
org.openscience.cdk.smiles.smarts.parser.
TokenMgrError
java.lang.
Exception
org.openscience.cdk.graph.invariant.exception.
BadMatrixFormatException
org.openscience.cdk.exception.
CDKException
org.openscience.cdk.qsar.
DescriptorException
org.openscience.cdk.exception.
InvalidSmilesException
org.openscience.cdk.exception.
NoSuchAtomException
org.openscience.cdk.exception.
NoSuchAtomTypeException
org.openscience.cdk.exception.
UnsupportedChemObjectException
org.openscience.cdk.graph.invariant.exception.
IndexOutOfBoundsException
org.openscience.cdk.graph.invariant.exception.
MatrixNotInvertibleException
org.openscience.cdk.iupac.parser.
ParseException
org.openscience.cdk.smiles.smarts.parser.
ParseException
org.openscience.cdk.smsd.tools.
TimeManager
org.openscience.cdk.smsd.global.
TimeOut
org.openscience.cdk.io.formats.
TinkerMM2Format
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
TinkerXYZFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.iupac.parser.
Token
(implements java.io.
Serializable
)
org.openscience.cdk.smiles.smarts.parser.
Token
(implements java.io.
Serializable
)
org.openscience.cdk.formula.rules.
ToleranceRangeRule
(implements org.openscience.cdk.formula.rules.
IRule
)
org.openscience.cdk.graph.matrix.
TopologicalMatrix
(implements org.openscience.cdk.graph.matrix.
IGraphMatrix
)
org.openscience.cdk.qsar.descriptors.molecular.
TPSADescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.geometry.surface.
Triangle
org.openscience.cdk.io.formats.
TurboMoleFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.config.
TXTBasedAtomTypeConfigurator
(implements org.openscience.cdk.config.
IAtomTypeConfigurator
)
org.openscience.cdk.controller.
UndoAdapter
(implements javax.swing.event.
UndoableEditListener
)
org.openscience.cdk.io.formats.
UniChemXYZFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.isomorphism.
UniversalIsomorphismTester
org.openscience.cdk.qsar.descriptors.molecular.
VABCDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.geometry.volume.
VABCVolume
org.openscience.cdk.qsar.descriptors.molecular.
VAdjMaDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.validate.
ValidationReport
org.openscience.cdk.validate.
ValidationTest
org.openscience.cdk.validate.
ValidatorEngine
(implements org.openscience.cdk.validate.
IValidator
)
org.openscience.cdk.io.formats.
VASPFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.qsar.descriptors.atomic.
VdWRadiusDescriptor
(implements org.openscience.cdk.qsar.
IAtomicDescriptor
)
org.openscience.cdk.math.
Vector
org.openscience.cdk.smsd.algorithm.vflib.map.
VFMapper
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IMapper
)
org.openscience.cdk.smsd.algorithm.vflib.map.
VFMCSMapper
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IMapper
)
org.openscience.cdk.smsd.algorithm.vflib.builder.
VFQueryBuilder
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IQuery
)
org.openscience.cdk.smsd.algorithm.vflib.map.
VFState
(implements org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IState
)
org.openscience.cdk.
Vibration
org.openscience.cdk.structgen.
VicinitySampler
org.openscience.cdk.io.formats.
ViewmolFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.geometry.cip.
VisitedAtoms
org.openscience.cdk.qsar.descriptors.molecular.
WeightDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
WeightedPathDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
WHIMDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.qsar.descriptors.molecular.
WienerNumbersDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.
WriterFactory
org.openscience.cdk.io.formats.
XEDFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.qsar.descriptors.molecular.
XLogPDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
XYZFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
YasaraFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.qsar.descriptors.molecular.
ZagrebIndexDescriptor
(implements org.openscience.cdk.qsar.
IMolecularDescriptor
)
org.openscience.cdk.io.formats.
ZindoFormat
(implements org.openscience.cdk.io.formats.
IChemFormat
)
org.openscience.cdk.io.formats.
ZMatrixFormat
(implements org.openscience.cdk.io.formats.
IChemFormatMatcher
)
org.openscience.cdk.geometry.
ZMatrixTools
Interface Hierarchy
org.openscience.cdk.smsd.algorithm.matchers.
AtomMatcher
org.openscience.cdk.smsd.algorithm.matchers.
BondMatcher
org.openscience.cdk.graph.rebond.
Bspt.Tuple
java.lang.
Cloneable
org.openscience.cdk.interfaces.
IAdductFormula
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomContainer
(also extends org.openscience.cdk.interfaces.
IChemObject
, org.openscience.cdk.interfaces.
IChemObjectListener
)
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IAtomContainerSet
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
IAtomParity
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
ICDKObject
org.openscience.cdk.interfaces.
IAdductFormula
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomContainer
(also extends org.openscience.cdk.interfaces.
IChemObject
, org.openscience.cdk.interfaces.
IChemObjectListener
)
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IAtomContainerSet
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
IAtomParity
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
IChemFile
org.openscience.cdk.interfaces.
IChemModel
org.openscience.cdk.interfaces.
IChemObject
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomContainer
(also extends org.openscience.cdk.interfaces.
IChemObjectListener
)
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IAtomContainerSet
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
IChemFile
org.openscience.cdk.interfaces.
IChemModel
org.openscience.cdk.interfaces.
IChemSequence
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IElectronContainer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IElement
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
IMapping
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IReaction
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.interfaces.
IReactionSet
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.isomorphism.matchers.
IRGroupQuery
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IChemSequence
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IDoubleBondStereochemistry
org.openscience.cdk.interfaces.
IElectronContainer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IElement
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
IMapping
org.openscience.cdk.interfaces.
IMolecularFormula
org.openscience.cdk.interfaces.
IMolecularFormulaSet
org.openscience.cdk.interfaces.
IAdductFormula
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBStructure
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IReaction
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.interfaces.
IReactionSet
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.isomorphism.matchers.
IRGroupQuery
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IStereoElement
org.openscience.cdk.interfaces.
IAtomParity
org.openscience.cdk.interfaces.
IDoubleBondStereochemistry
org.openscience.cdk.interfaces.
ITetrahedralChirality
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
ITetrahedralChirality
org.openscience.cdk.interfaces.
IChemFile
org.openscience.cdk.interfaces.
IChemModel
org.openscience.cdk.interfaces.
IChemObject
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomContainer
(also extends org.openscience.cdk.interfaces.
IChemObjectListener
)
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IAtomContainerSet
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
IChemFile
org.openscience.cdk.interfaces.
IChemModel
org.openscience.cdk.interfaces.
IChemSequence
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IElectronContainer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IElement
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
IMapping
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IReaction
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.interfaces.
IReactionSet
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.isomorphism.matchers.
IRGroupQuery
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IChemSequence
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IDoubleBondStereochemistry
org.openscience.cdk.interfaces.
IElectronContainer
org.openscience.cdk.interfaces.
IBond
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IElement
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IIsotope
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IAtomType
org.openscience.cdk.interfaces.
IAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.interfaces.
ILonePair
org.openscience.cdk.interfaces.
IMapping
org.openscience.cdk.interfaces.
IMolecularFormula
org.openscience.cdk.interfaces.
IMolecularFormulaSet
org.openscience.cdk.interfaces.
IAdductFormula
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMoleculeSet
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBAtom
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBStructure
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPseudoAtom
org.openscience.cdk.interfaces.
IFragmentAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtom
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IReaction
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.interfaces.
IReactionSet
org.openscience.cdk.interfaces.
IReactionScheme
org.openscience.cdk.isomorphism.matchers.
IRGroupQuery
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IRingSet
org.openscience.cdk.interfaces.
ISingleElectron
org.openscience.cdk.interfaces.
IStereoElement
org.openscience.cdk.interfaces.
IAtomParity
org.openscience.cdk.interfaces.
IDoubleBondStereochemistry
org.openscience.cdk.interfaces.
ITetrahedralChirality
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
ITetrahedralChirality
java.util.
Comparator
<T>
org.openscience.cdk.geometry.cip.rules.
ISequenceSubRule
<ILigand>
java.util.
EventListener
org.openscience.cdk.event.
ICDKChangeListener
org.openscience.cdk.event.
ICDKSelectionChangeListener
org.openscience.cdk.io.listener.
IChemObjectIOListener
org.openscience.cdk.io.listener.
IReaderListener
org.openscience.cdk.io.listener.
IWriterListener
org.openscience.cdk.io.listener.
IReaderListener
org.openscience.cdk.io.listener.
IWriterListener
org.openscience.cdk.renderer.color.
IAtomColorer
org.openscience.cdk.config.
IAtomTypeConfigurator
org.openscience.cdk.atomtype.
IAtomTypeGuesser
org.openscience.cdk.atomtype.
IAtomTypeMatcher
org.openscience.cdk.math.qm.
IBasis
org.openscience.cdk.smsd.labelling.
ICanonicalMoleculeLabeller
org.openscience.cdk.smsd.labelling.
ICanonicalReactionLabeller
org.openscience.cdk.interfaces.
IChemObjectBuilder
org.openscience.cdk.interfaces.
IChemObjectChangeEvent
org.openscience.cdk.io.
IChemObjectIO
org.openscience.cdk.io.
IChemObjectReader
org.openscience.cdk.io.iterator.
IIteratingChemObjectReader
<T> (also extends java.util.
Iterator
<E>)
org.openscience.cdk.io.
ISimpleChemObjectReader
org.openscience.cdk.io.
IChemObjectWriter
org.openscience.cdk.io.iterator.event.
IEventChemObjectReader
org.openscience.cdk.io.iterator.
IIteratingChemObjectReader
<T> (also extends org.openscience.cdk.io.
IChemObjectReader
, java.util.
Iterator
<E>)
org.openscience.cdk.io.
ISimpleChemObjectReader
org.openscience.cdk.interfaces.
IChemObjectListener
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IAtomContainer
(also extends org.openscience.cdk.interfaces.
IChemObject
)
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
ICrystal
org.openscience.cdk.interfaces.
IMolecule
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IMonomer
org.openscience.cdk.interfaces.
IAminoAcid
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBMonomer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPolymer
org.openscience.cdk.interfaces.
IBioPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.interfaces.
IPDBPolymer
org.openscience.cdk.isomorphism.matchers.
IQueryAtomContainer
org.openscience.cdk.interfaces.
IRing
org.openscience.cdk.interfaces.
IStrand
org.openscience.cdk.io.
IChemObjectReaderErrorHandler
org.openscience.cdk.renderer.selection.
IChemObjectSelection
org.openscience.cdk.libio.cml.
ICMLCustomizer
org.openscience.cdk.io.cml.
ICMLModule
org.openscience.cdk.io.cml.
ICMLConvention
org.openscience.cdk.tools.
IDeduceBondOrderTool
org.openscience.cdk.qsar.
IDescriptor
org.openscience.cdk.qsar.
IAtomicDescriptor
org.openscience.cdk.qsar.
IAtomPairDescriptor
org.openscience.cdk.qsar.
IBondDescriptor
org.openscience.cdk.qsar.
IMolecularDescriptor
org.openscience.cdk.tools.diff.tree.
IDifference
org.openscience.cdk.tools.diff.tree.
IDifferenceList
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IEdge
org.openscience.cdk.charges.
IElectronicPropertyCalculator
org.openscience.cdk.charges.
IChargeCalculator
org.openscience.cdk.smsd.interfaces.
IFinalMapping
org.openscience.cdk.fingerprint.
IFingerprinter
org.openscience.cdk.renderer.font.
IFontManager
org.openscience.cdk.fragment.
IFragmenter
org.openscience.cdk.math.
IFunction
org.openscience.cdk.renderer.generators.
IGenerator
<T>
org.openscience.cdk.renderer.generators.
IGeneratorParameter
<T>
org.openscience.cdk.graph.matrix.
IGraphMatrix
org.openscience.cdk.
IImplementationSpecification
org.openscience.cdk.geometry.cip.
ILigand
org.openscience.cdk.tools.
ILoggingTool
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IMapper
org.openscience.cdk.smsd.interfaces.
IMCSBase
org.openscience.cdk.controller.
IMouseEventRelay
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
INode
org.openscience.cdk.reaction.type.parameters.
IParameterReact
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IQuery
org.openscience.cdk.isomorphism.matchers.
IQueryBond
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IQueryCompiler
org.openscience.cdk.geometry.
IRDFWeightFunction
org.openscience.cdk.reaction.
IReactionMechanism
org.openscience.cdk.reaction.
IReactionProcess
org.openscience.cdk.renderer.
IRenderer
<T>
org.openscience.cdk.renderer.elements.
IRenderingElement
org.openscience.cdk.renderer.elements.
IRenderingVisitor
org.openscience.cdk.renderer.visitor.
IDrawVisitor
org.openscience.cdk.io.formats.
IResourceFormat
org.openscience.cdk.io.formats.
IChemFormat
org.openscience.cdk.io.formats.
IChemFormatMatcher
org.openscience.cdk.io.formats.
IChemFormatMatcher
org.openscience.cdk.formula.rules.
IRule
org.openscience.cdk.smsd.algorithm.vflib.interfaces.
IState
org.openscience.cdk.structgen.
IStructureGenerationListener
java.util.
Iterator
<E>
org.openscience.cdk.io.iterator.
IIteratingChemObjectReader
<T> (also extends org.openscience.cdk.io.
IChemObjectReader
)
org.openscience.cdk.io.random.
IRandomAccessChemObjectReader
<T>
java.util.
ListIterator
<E>
org.openscience.cdk.io.random.
IRandomAccessChemObjectReader
<T>
org.openscience.cdk.tools.
IValencyChecker
org.openscience.cdk.validate.
IValidator
org.openscience.cdk.controller.
IViewEventRelay
org.openscience.cdk.smiles.smarts.parser.
Node
org.openscience.cdk.iupac.parser.
NomParserConstants
org.openscience.cdk.smsd.ring.
RingFinder
java.io.
Serializable
org.openscience.cdk.qsar.result.
IDescriptorResult
org.openscience.cdk.smiles.smarts.parser.
SMARTSParserConstants
org.openscience.cdk.smiles.smarts.parser.
SMARTSParserTreeConstants
org.openscience.cdk.smiles.smarts.parser.
SMARTSParserVisitor
org.openscience.cdk.smsd.algorithm.matchers.
VFAtomMatcher
org.openscience.cdk.smsd.algorithm.matchers.
VFBondMatcher
Annotation Type Hierarchy
org.openscience.cdk.annotations.
TestMethod
(implements java.lang.annotation.
Annotation
)
org.openscience.cdk.annotations.
TestClass
(implements java.lang.annotation.
Annotation
)
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
org.openscience.cdk.formula.rules.
MMElementRule.RangeMass
org.openscience.cdk.formula.rules.
MMElementRule.Database
org.openscience.cdk.geometry.cip.
CIPTool.CIP_CHIRALITY
org.openscience.cdk.interfaces.
ITetrahedralChirality.Stereo
org.openscience.cdk.interfaces.
IReaction.Direction
org.openscience.cdk.interfaces.
IDoubleBondStereochemistry.Conformation
org.openscience.cdk.interfaces.
IBond.Order
org.openscience.cdk.interfaces.
IBond.Stereo
org.openscience.cdk.interfaces.
IAtomType.Hybridization
org.openscience.cdk.io.
IChemObjectReader.Mode
org.openscience.cdk.renderer.elements.
WedgeLineElement.Direction
org.openscience.cdk.renderer.elements.
TextGroupElement.Position
org.openscience.cdk.renderer.elements.
LineElement.LineType
org.openscience.cdk.renderer.elements.path.
Type
org.openscience.cdk.renderer.font.
IFontManager.FontStyle
org.openscience.cdk.renderer.generators.
BasicAtomGenerator.Shape
org.openscience.cdk.smsd.interfaces.
Algorithm
org.openscience.cdk.stereo.
StereoTool.StereoClass
org.openscience.cdk.stereo.
StereoTool.TetrahedralSign
org.openscience.cdk.stereo.
StereoTool.SquarePlanarShape
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