org.openscience.cdk.io

Class MDLRXNV2000Reader

java.lang.Object

org.openscience.cdk.io.DefaultChemObjectReader

org.openscience.cdk.io.MDLRXNV2000Reader

All Implemented Interfaces:

IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

@TestClass(value="org.openscience.cdk.io.MDLRXNV2000ReaderTest")
public class MDLRXNV2000Reader
extends DefaultChemObjectReader

Reads a molecule from an MDL RXN file . This MDL RXN reader uses the MDLV2000 reader to read each mol file

Author:

Egon Willighagen, Thomas Kuhn

Keywords:

file format, MDL RXN

Created on:

2003-07-24

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

IChemObjectReader.Mode

Constructor Summary

Constructors

Constructor and Description
MDLRXNV2000Reader()
MDLRXNV2000Reader(InputStream input)
MDLRXNV2000Reader(InputStream input, IChemObjectReader.Mode mode)
MDLRXNV2000Reader(Reader in) Constructs a new MDLReader that can read Molecule from a given Reader.
MDLRXNV2000Reader(Reader in, IChemObjectReader.Mode mode)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	accepts(Class classObject) Returns whether the given IChemObject can be read or written.
boolean	accepts(IChemObject object)
void	close() Closes this IChemObjectIO's resources.
IResourceFormat	getFormat() Returns the IResourceFormat class for this IO class.
<T extends IChemObject> T	read(T object) Takes an object which subclasses IChemObject, e.g.Molecule, and will read this (from file, database, internet etc).
void	setReader(InputStream input) Sets the InputStream from which this ChemObjectReader should read the contents.
void	setReader(Reader input) Sets the Reader from which this ChemObjectReader should read the contents.

Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader

addChemObjectIOListener, getIOSettings, handleError, handleError, handleError, handleError, removeChemObjectIOListener, setErrorHandler, setReaderMode

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MDLRXNV2000Reader

public MDLRXNV2000Reader(Reader in)

Constructs a new MDLReader that can read Molecule from a given Reader.

Parameters:

in - The Reader to read from

MDLRXNV2000Reader

public MDLRXNV2000Reader(Reader in,
                 IChemObjectReader.Mode mode)

MDLRXNV2000Reader

public MDLRXNV2000Reader(InputStream input)

MDLRXNV2000Reader

public MDLRXNV2000Reader(InputStream input,
                 IChemObjectReader.Mode mode)

MDLRXNV2000Reader

public MDLRXNV2000Reader()

Method Detail

getFormat

@TestMethod(value="testGetFormat")
public IResourceFormat getFormat()

Description copied from interface: IChemObjectIO

Returns the IResourceFormat class for this IO class.

setReader

@TestMethod(value="testSetReader_Reader")
public void setReader(Reader input)
               throws CDKException

Description copied from interface: IChemObjectReader

Sets the Reader from which this ChemObjectReader should read the contents.

Throws:

CDKException

setReader

@TestMethod(value="testSetReader_InputStream")
public void setReader(InputStream input)
               throws CDKException

Description copied from interface: IChemObjectReader

Sets the InputStream from which this ChemObjectReader should read the contents.

Throws:

CDKException

accepts

@TestMethod(value="testAccepts")
public boolean accepts(Class classObject)

Description copied from interface: IChemObjectIO

Returns whether the given IChemObject can be read or written.

Parameters:

classObject - IChemObject of which is tested if it can be handled.

Returns:

true, if the IChemObject can be handled.

read

public <T extends IChemObject> T read(T object)
                           throws CDKException

Takes an object which subclasses IChemObject, e.g.Molecule, and will read this (from file, database, internet etc). If the specific implementation does not support a specific IChemObject it will throw an Exception.

Parameters:

object - The object that subclasses IChemObject

Returns:

The IChemObject read

Throws:

CDKException

accepts

@TestMethod(value="testAccepts")
public boolean accepts(IChemObject object)

close

@TestMethod(value="testClose")
public void close()
           throws IOException

Description copied from interface: IChemObjectIO

Closes this IChemObjectIO's resources.

Throws:

IOException