Uses of Class
org.openscience.cdk.isomorphism.matchers.QueryChemObject
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Packages that use QueryChemObject Package Description org.openscience.cdk.isomorphism.matchers org.openscience.cdk.isomorphism.matchers.smarts org.openscience.cdk.pharmacophore -
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Uses of QueryChemObject in org.openscience.cdk.isomorphism.matchers
Subclasses of QueryChemObject in org.openscience.cdk.isomorphism.matchers Modifier and Type Class Description class
CTFileQueryBond
Deprecated.UseExpr.Type.SINGLE_OR_AROMATIC
etc.class
InverseSymbolSetQueryAtom
Deprecated.class
OrderQueryBond
Deprecated.class
OrderQueryBondOrderOnly
Deprecated.Usenew QueryBond(beg, end, ORDER, bord)
class
QueryAtom
class
QueryAtomContainer
class
QueryBond
Implements the concept of a "query bond" between two or more atoms.class
RGroupQuery
Represents information contained in a Symyx RGfile (R-group query file).
It contains a root structure (the scaffold if you like), a map with R-group definitions (each of which can contain multiple substitutes) and a map with attachment points.class
SymbolAndChargeQueryAtom
Deprecated.class
SymbolChargeIDQueryAtom
class
SymbolQueryAtom
Deprecated.class
SymbolSetQueryAtom
Deprecated.Usenew Expr(Element, 6).and(new Expr(Element, 8))
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Uses of QueryChemObject in org.openscience.cdk.isomorphism.matchers.smarts
Subclasses of QueryChemObject in org.openscience.cdk.isomorphism.matchers.smarts Modifier and Type Class Description class
AliphaticAtom
Deprecated.class
AliphaticSymbolAtom
Deprecated.class
AnyAtom
Deprecated.class
AnyOrderQueryBond
Deprecated.class
AromaticAtom
Deprecated.class
AromaticOrSingleQueryBond
Deprecated.class
AromaticQueryBond
Deprecated.class
AromaticSymbolAtom
Deprecated.class
AtomicNumberAtom
Deprecated.class
ChiralityAtom
Deprecated.class
ExplicitConnectionAtom
Deprecated.class
FormalChargeAtom
Deprecated.class
HybridizationNumberAtom
Deprecated.class
HydrogenAtom
Deprecated.class
ImplicitHCountAtom
Deprecated.class
LogicalOperatorAtom
Deprecated.class
LogicalOperatorBond
Deprecated.class
MassAtom
Deprecated.class
NonCHHeavyAtom
Deprecated.class
OrderQueryBond
Deprecated.class
PeriodicGroupNumberAtom
Deprecated.class
ReactionRoleQueryAtom
Deprecated.class
RecursiveSmartsAtom
Deprecated.class
RingBond
Deprecated.class
RingIdentifierAtom
Deprecated.class
RingMembershipAtom
Deprecated.class
SmallestRingAtom
Deprecated.class
SMARTSAtom
Deprecated.class
SMARTSBond
Deprecated.class
StereoBond
Deprecated.class
TotalConnectionAtom
Deprecated.class
TotalHCountAtom
Deprecated.class
TotalRingConnectionAtom
Deprecated.class
TotalValencyAtom
Deprecated. -
Uses of QueryChemObject in org.openscience.cdk.pharmacophore
Subclasses of QueryChemObject in org.openscience.cdk.pharmacophore Modifier and Type Class Description class
PharmacophoreQuery
Represents a colleciton of pharmacophore groups and constraints.
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