Package org.openscience.cdk.isomorphism.matchers.smarts

Class AromaticOrSingleQueryBond

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.smarts.SMARTSBond

org.openscience.cdk.isomorphism.matchers.smarts.AromaticOrSingleQueryBond

All Implemented Interfaces:

Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer, IQueryBond

@Deprecated
public class AromaticOrSingleQueryBond
extends SMARTSBond

Deprecated.

This matches an aromatic or a single bond, used when no bond is specified between an atom.

Source code:

main

Belongs to CDK module:

smarts

Keywords:

SMARTS

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Display, IBond.Order, IBond.Stereo

Field Summary

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Fields inherited from interface org.openscience.cdk.interfaces.IChemObject

ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED

Constructor Summary

Constructors

Constructor	Description
AromaticOrSingleQueryBond(IChemObjectBuilder builder)	Deprecated. Creates a new instance.
AromaticOrSingleQueryBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder)	Deprecated. Creates a new instance

Method Summary

Modifier and Type	Method	Description
boolean	matches(IBond bond)	Deprecated. Returns true of the given bond matches this IQueryBond.
String	toString()	Deprecated. Returns a one line string representation of this query bond.

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, equals, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getElectronCount, getEnd, getExpression, getIndex, getOrder, getOther, getStereo, hashCode, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setElectronCount, setExpression, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, clear, flags, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, matches, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Constructor Detail

AromaticOrSingleQueryBond

public AromaticOrSingleQueryBond(IChemObjectBuilder builder)

Deprecated.

Creates a new instance.

AromaticOrSingleQueryBond

public AromaticOrSingleQueryBond(IQueryAtom atom1,
                                 IQueryAtom atom2,
                                 IBond.Order order,
                                 IChemObjectBuilder builder)

Deprecated.

Creates a new instance

Method Detail

matches

public boolean matches(IBond bond)

Deprecated.

Description copied from class: QueryBond

Returns true of the given bond matches this IQueryBond.

Specified by:

matches in interface IQueryBond

Overrides:

matches in class SMARTSBond

Parameters:

bond - IBond to match against

Returns:

true, if this IQueryBond matches the given IBond

toString

public String toString()

Deprecated.

Description copied from class: QueryBond

Returns a one line string representation of this query bond.

Specified by:

toString in interface IChemObject

Overrides:

toString in class QueryBond

Returns:

The string representation of this query bond