Package org.openscience.cdk.isomorphism.matchers.smarts

Class StereoBond

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.smarts.SMARTSBond

org.openscience.cdk.isomorphism.matchers.smarts.StereoBond

All Implemented Interfaces:

Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer, IQueryBond

@Deprecated
public class StereoBond
extends SMARTSBond

Deprecated.

This query bond indicates a particular geometric stereo configuration.

Keywords:

SMARTS

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	StereoBond.Direction	Deprecated.

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Display, IBond.Order, IBond.Stereo

Field Summary

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Fields inherited from interface org.openscience.cdk.interfaces.IChemObject

ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, MARKUSH, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED

Constructor Summary

Constructors

Constructor	Description
StereoBond(IChemObjectBuilder builder, StereoBond.Direction direction, boolean unspecified)	Deprecated.

Method Summary

Modifier and Type	Method	Description
StereoBond.Direction	direction(IAtom atom)	Deprecated.
boolean	matches(IBond bond)	Deprecated. Returns true of the given bond matches this IQueryBond.
boolean	unspecified()	Deprecated.

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, equals, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getElectronCount, getEnd, getExpression, getIndex, getOrder, getOther, getStereo, hashCode, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setElectronCount, setExpression, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, clear, flags, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, matches, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Constructor Details

StereoBond

public StereoBond(IChemObjectBuilder builder,
 StereoBond.Direction direction,
 boolean unspecified)

Deprecated.

Method Details

matches

public boolean matches(IBond bond)

Deprecated.

Description copied from class: QueryBond

Returns true of the given bond matches this IQueryBond.

Specified by:

matches in interface IQueryBond

Overrides:

matches in class SMARTSBond

Parameters:

bond - IBond to match against

Returns:

true, if this IQueryBond matches the given IBond

unspecified

public boolean unspecified()

Deprecated.

direction

public StereoBond.Direction direction(IAtom atom)

Deprecated.