Package org.openscience.cdk.isomorphism.matchers

Class CTFileQueryBond

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.CTFileQueryBond

All Implemented Interfaces:

Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer, IQueryBond

@Deprecated
public class CTFileQueryBond
extends QueryBond
implements IQueryBond

Deprecated.

Use Expr.Type.SINGLE_OR_AROMATIC etc.

Captures query bond types defined in the CTFile.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	CTFileQueryBond.Type	Deprecated.

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Display, IBond.Order, IBond.Stereo

Field Summary

Fields

Modifier and Type	Field	Description
protected CTFileQueryBond.Type	type	Deprecated. The type of this bond.

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Fields inherited from interface org.openscience.cdk.interfaces.IChemObject

ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, MARKUSH, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED

Constructor Summary

Constructors

Constructor	Description
CTFileQueryBond(IChemObjectBuilder builder)	Deprecated.

Method Summary

Modifier and Type	Method	Description
CTFileQueryBond.Type	getType()	Deprecated. Getter for type
boolean	matches(IBond bond)	Deprecated. Returns true of the given bond matches this IQueryBond.
static CTFileQueryBond	ofType(IBond bond, int type)	Deprecated. Create a CTFileQueryBond of the specified type (from the MDL spec).
void	setType(CTFileQueryBond.Type type)	Deprecated. Getter for bond type

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, equals, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getElectronCount, getEnd, getExpression, getIndex, getOrder, getOther, getStereo, hashCode, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setElectronCount, setExpression, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, clear, flags, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, matches, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setDisplay, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Field Details

type

protected CTFileQueryBond.Type type

Deprecated.

The type of this bond.

Constructor Details

CTFileQueryBond

public CTFileQueryBond(IChemObjectBuilder builder)

Deprecated.

Method Details

setType

public void setType(CTFileQueryBond.Type type)

Deprecated.

Getter for bond type

Parameters:

type -

getType

public CTFileQueryBond.Type getType()

Deprecated.

Getter for type

Returns:

the type of this bond

matches

public boolean matches(IBond bond)

Deprecated.

Description copied from class: QueryBond

Returns true of the given bond matches this IQueryBond.

Specified by:

matches in interface IQueryBond

Overrides:

matches in class QueryBond

Parameters:

bond - IBond to match against

Returns:

true, if this IQueryBond matches the given IBond

ofType

public static CTFileQueryBond ofType(IBond bond,
 int type)

Deprecated.

Create a CTFileQueryBond of the specified type (from the MDL spec). The bond copies the atoms and sets the type using the value 'type', 5 = single or double, 8 = any, etc.

Parameters:

bond - an existing bond

type - the specified type

Returns:

a new CTFileQueryBond