IPDBMonomer (cdk 2.9 API)

All Superinterfaces:

Cloneable, IAtomContainer, ICDKObject, IChemObject, IChemObjectListener, IMonomer

All Known Implementing Classes:

DebugPDBMonomer, PDBMonomer, PDBMonomer
```
public interface IPDBMonomer
extends IMonomer
```
Represents the idea of an protein monomer as found in PDB files.

Author:

Miguel Rojas <miguel.rojas@uni-koeln.de>

Source code:
main

Belongs to CDK module:
interfaces

Keywords:

pdbpolymer

Created on:

2006-11-20

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`IPDBMonomer`	`clone()`	Returns a deep clone of this IChemObject.
`String`	`getChainID()`	Gets the Chain ID of this monomer.
`String`	`getICode()`	Gets the ICode of this monomer.
`String`	`getResSeq()`	Gets the sequence identifier of this monomer.
`void`	`setChainID(String newChainID)`	Sets the Chain ID of this monomer.
`void`	`setICode(String newICode)`	Sets the ICode of this monomer.
`void`	`setResSeq(String newResSeq)`	Sets the sequence identifier of this monomer.

Methods inherited from interface org.openscience.cdk.interfaces.IAtomContainer
add, addAtom, addBond, addBond, addBond, addElectronContainer, addLonePair, addLonePair, addSingleElectron, addSingleElectron, addStereoElement, atoms, bonds, contains, contains, contains, contains, contains, electronContainers, getAtom, getAtomCount, getAtomNumber, getBond, getBond, getBondCount, getBondNumber, getBondNumber, getBondOrderSum, getConnectedAtomsCount, getConnectedAtomsList, getConnectedBondsCount, getConnectedBondsCount, getConnectedBondsList, getConnectedElectronContainersList, getConnectedLonePairsCount, getConnectedLonePairsList, getConnectedSingleElectronsCount, getConnectedSingleElectronsList, getElectronContainer, getElectronContainerCount, getFirstAtom, getLastAtom, getLonePair, getLonePairCount, getLonePairNumber, getMaximumBondOrder, getMinimumBondOrder, getSingleElectron, getSingleElectronCount, getSingleElectronNumber, getTitle, indexOf, indexOf, indexOf, indexOf, isEmpty, lonePairs, remove, removeAllBonds, removeAllElectronContainers, removeAllElements, removeAtom, removeAtom, removeAtomAndConnectedElectronContainers, removeAtomOnly, removeAtomOnly, removeBond, removeBond, removeBond, removeElectronContainer, removeElectronContainer, removeLonePair, removeLonePair, removeSingleElectron, removeSingleElectron, setAtom, setAtoms, setBonds, setStereoElements, setTitle, singleElectrons, stereoElements

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject
getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject
addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.IChemObjectListener
stateChanged

Methods inherited from interface org.openscience.cdk.interfaces.IMonomer
getMonomerName, getMonomerType, setMonomerName, setMonomerType

- Method Detail
  - setICode
```
void setICode(String newICode)
```
    Sets the ICode of this monomer.
    
    Parameters:
    
    newICode - the I code of this monomer
  - getICode
```
String getICode()
```
    Gets the ICode of this monomer.
    
    Returns:
    
    the ICode of this monomer
  - setChainID
```
void setChainID(String newChainID)
```
    Sets the Chain ID of this monomer.
    
    Parameters:
    
    newChainID - the Chain ID of this monomer
  - getChainID
```
String getChainID()
```
    Gets the Chain ID of this monomer.
    
    Returns:
    
    the Chain ID of this monomer
  - getResSeq
```
String getResSeq()
```
    Gets the sequence identifier of this monomer.
    
    Returns:
    
    the sequence identifier of this monomer
  - setResSeq
```
void setResSeq(String newResSeq)
```
    Sets the sequence identifier of this monomer.
    
    Parameters:
    
    newResSeq - the new sequence identifier of this monomer
  - clone
```
IPDBMonomer clone()
           throws CloneNotSupportedException
```
    Returns a deep clone of this IChemObject.
    
    Specified by:
    
    clone in interface IAtomContainer
    
    Specified by:
    
    clone in interface IChemObject
    
    Specified by:
    
    clone in interface IMonomer
    
    Returns:
    
    Object the clone of this IChemObject.
    
    Throws:
    
    CloneNotSupportedException - if the IChemObject cannot be cloned