Package org.openscience.cdk.interfaces

Interface IMonomer

All Superinterfaces:

Cloneable, IAtomContainer, ICDKObject, IChemObject, IChemObjectListener

All Known Subinterfaces:

IAminoAcid, IPDBMonomer

All Known Implementing Classes:

AminoAcid, AminoAcid, DebugAminoAcid, DebugMonomer, DebugPDBMonomer, Monomer, Monomer, PDBMonomer, PDBMonomer

public interface IMonomer
extends IAtomContainer

A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.

Author:

Edgar Luttmann <edgar@uni-paderborn.de>

Keywords:

monomer

Created on:

2001-08-06

Field Summary

Fields inherited from interface org.openscience.cdk.interfaces.IChemObject

ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, MARKUSH, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED

Method Summary

Modifier and Type	Method	Description
IMonomer	clone()	Returns a deep clone of this IChemObject.
String	getMonomerName()	Retrieve the monomer name.
String	getMonomerType()	Retrieve the monomer type.
void	setMonomerName(String cMonomerName)	Set the name of the Monomer object.
void	setMonomerType(String cMonomerType)	Set the type of the Monomer object.

Methods inherited from interface org.openscience.cdk.interfaces.IAtomContainer

add, addAtom, addBond, addBond, addBond, addBond, addElectronContainer, addLonePair, addLonePair, addSingleElectron, addSingleElectron, addStereoElement, atoms, bonds, contains, contains, contains, contains, contains, electronContainers, getAtom, getAtomCount, getAtomNumber, getBond, getBond, getBondCount, getBondNumber, getBondNumber, getBondOrderSum, getConnectedAtomsCount, getConnectedAtomsList, getConnectedBondsCount, getConnectedBondsCount, getConnectedBondsList, getConnectedElectronContainersList, getConnectedLonePairsCount, getConnectedLonePairsList, getConnectedSingleElectronsCount, getConnectedSingleElectronsList, getElectronContainer, getElectronContainerCount, getFirstAtom, getLastAtom, getLonePair, getLonePairCount, getLonePairNumber, getMaximumBondOrder, getMinimumBondOrder, getSingleElectron, getSingleElectronCount, getSingleElectronNumber, getTitle, indexOf, indexOf, indexOf, indexOf, isEmpty, lonePairs, newAtom, newAtom, newAtom, newAtom, newBond, newBond, remove, removeAllBonds, removeAllElectronContainers, removeAllElements, removeAtom, removeAtom, removeAtomAndConnectedElectronContainers, removeAtomOnly, removeAtomOnly, removeBond, removeBond, removeBond, removeElectronContainer, removeElectronContainer, removeLonePair, removeLonePair, removeSingleElectron, removeSingleElectron, setAtom, setAtoms, setBonds, setStereoElements, setTitle, singleElectrons, stereoElements

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.IChemObjectListener

stateChanged

Method Details

getMonomerName

String getMonomerName()

Retrieve the monomer name.

Returns:

The name of the Monomer object

See Also:

• setMonomerName(java.lang.String)

getMonomerType

String getMonomerType()

Retrieve the monomer type.

Returns:

The type of the Monomer object

See Also:

• setMonomerType(java.lang.String)

setMonomerName

void setMonomerName(String cMonomerName)

Set the name of the Monomer object.

Parameters:

cMonomerName - The new name for this monomer

See Also:

• getMonomerName()

setMonomerType

void setMonomerType(String cMonomerType)

Set the type of the Monomer object.

Parameters:

cMonomerType - The new type for this monomer

See Also:

• getMonomerType()

clone

IMonomer clone()
        throws CloneNotSupportedException

Returns a deep clone of this IChemObject.

Specified by:

clone in interface IAtomContainer

Specified by:

clone in interface IChemObject

Returns:

Object the clone of this IChemObject.

Throws:

CloneNotSupportedException - if the IChemObject cannot be cloned