Package org.openscience.cdk.debug
Class DebugPDBMonomer
- java.lang.Object
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- org.openscience.cdk.ChemObject
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- org.openscience.cdk.AtomContainer
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- org.openscience.cdk.Monomer
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- org.openscience.cdk.protein.data.PDBMonomer
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- org.openscience.cdk.debug.DebugPDBMonomer
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- All Implemented Interfaces:
Serializable
,Cloneable
,IAtomContainer
,ICDKObject
,IChemObject
,IChemObjectListener
,IMonomer
,IPDBMonomer
public class DebugPDBMonomer extends PDBMonomer implements IPDBMonomer
Debugging data class.- Author:
- Miguel Rojas
- See Also:
- Serialized Form
- Source code:
- main
- Belongs to CDK module:
- datadebug
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Field Summary
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Fields inherited from interface org.openscience.cdk.interfaces.IChemObject
ALIPHATIC, AROMATIC, CONJUGATED, HYDROGEN_BOND_ACCEPTOR, HYDROGEN_BOND_DONOR, IN_RING, MAPPED, NOT_IN_RING, PLACED, REACTIVE_CENTER, SINGLE_OR_DOUBLE, TYPEABLE, VISITED
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Constructor Summary
Constructors Constructor Description DebugPDBMonomer()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getChainID()
Gets the Chain ID of this monomer.String
getICode()
Gets the ICode of this monomer.void
setChainID(String newChainID)
Sets the Chain ID of this monomer.void
setICode(String newICode)
Sets the ICode of this monomer.-
Methods inherited from class org.openscience.cdk.protein.data.PDBMonomer
clone, getResSeq, setResSeq, toString
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Methods inherited from class org.openscience.cdk.Monomer
getMonomerName, getMonomerType, setMonomerName, setMonomerType
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Methods inherited from class org.openscience.cdk.AtomContainer
add, addAtom, addBond, addBond, addBond, addElectronContainer, addLonePair, addLonePair, addSingleElectron, addSingleElectron, addStereoElement, atoms, bonds, contains, contains, contains, contains, contains, electronContainers, getAtom, getAtomCount, getAtomNumber, getBond, getBond, getBondCount, getBondNumber, getBondNumber, getBondOrderSum, getConnectedAtomsCount, getConnectedAtomsList, getConnectedBondsCount, getConnectedBondsCount, getConnectedBondsList, getConnectedElectronContainersList, getConnectedLonePairsCount, getConnectedLonePairsList, getConnectedSingleElectronsCount, getConnectedSingleElectronsList, getElectronContainer, getElectronContainerCount, getFirstAtom, getLastAtom, getLonePair, getLonePairCount, getLonePairNumber, getMaximumBondOrder, getMinimumBondOrder, getSingleElectron, getSingleElectronCount, getSingleElectronNumber, getTitle, indexOf, indexOf, indexOf, indexOf, isEmpty, lonePairs, newAtom, newAtom, newBond, remove, removeAllBonds, removeAllElectronContainers, removeAllElements, removeAtom, removeAtom, removeAtomAndConnectedElectronContainers, removeAtomOnly, removeAtomOnly, removeBond, removeBond, removeBond, removeElectronContainer, removeElectronContainer, removeLonePair, removeLonePair, removeSingleElectron, removeSingleElectron, setAtom, setAtoms, setBonds, setStereoElements, setTitle, shallowCopy, singleElectrons, stateChanged, stereoElements
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Methods inherited from class org.openscience.cdk.ChemObject
addListener, addProperties, clear, compare, flags, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty
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Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface org.openscience.cdk.interfaces.IAtomContainer
add, addAtom, addBond, addBond, addBond, addElectronContainer, addLonePair, addLonePair, addSingleElectron, addSingleElectron, addStereoElement, atoms, bonds, contains, contains, contains, contains, contains, electronContainers, getAtom, getAtomCount, getAtomNumber, getBond, getBond, getBondCount, getBondNumber, getBondNumber, getBondOrderSum, getConnectedAtomsCount, getConnectedAtomsList, getConnectedBondsCount, getConnectedBondsCount, getConnectedBondsList, getConnectedElectronContainersList, getConnectedLonePairsCount, getConnectedLonePairsList, getConnectedSingleElectronsCount, getConnectedSingleElectronsList, getElectronContainer, getElectronContainerCount, getFirstAtom, getLastAtom, getLonePair, getLonePairCount, getLonePairNumber, getMaximumBondOrder, getMinimumBondOrder, getSingleElectron, getSingleElectronCount, getSingleElectronNumber, getTitle, indexOf, indexOf, indexOf, indexOf, isEmpty, lonePairs, newAtom, newAtom, newAtom, newAtom, newBond, newBond, remove, removeAllBonds, removeAllElectronContainers, removeAllElements, removeAtom, removeAtom, removeAtomAndConnectedElectronContainers, removeAtomOnly, removeAtomOnly, removeBond, removeBond, removeBond, removeElectronContainer, removeElectronContainer, removeLonePair, removeLonePair, removeSingleElectron, removeSingleElectron, setAtom, setAtoms, setBonds, setStereoElements, setTitle, singleElectrons, stereoElements
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Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject
getBuilder
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Methods inherited from interface org.openscience.cdk.interfaces.IChemObject
addListener, addProperties, clear, flags, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, is, notifyChanged, notifyChanged, removeListener, removeProperty, set, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString
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Methods inherited from interface org.openscience.cdk.interfaces.IChemObjectListener
stateChanged
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Methods inherited from interface org.openscience.cdk.interfaces.IMonomer
getMonomerName, getMonomerType, setMonomerName, setMonomerType
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Methods inherited from interface org.openscience.cdk.interfaces.IPDBMonomer
clone, getResSeq, setResSeq
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Method Detail
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setICode
public void setICode(String newICode)
Sets the ICode of this monomer.- Specified by:
setICode
in interfaceIPDBMonomer
- Overrides:
setICode
in classPDBMonomer
- Parameters:
newICode
- the I code of this monomer
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getICode
public String getICode()
Gets the ICode of this monomer.- Specified by:
getICode
in interfaceIPDBMonomer
- Overrides:
getICode
in classPDBMonomer
- Returns:
- the ICode of this monomer
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setChainID
public void setChainID(String newChainID)
Sets the Chain ID of this monomer.- Specified by:
setChainID
in interfaceIPDBMonomer
- Overrides:
setChainID
in classPDBMonomer
- Parameters:
newChainID
- the Chain ID of this monomer
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getChainID
public String getChainID()
Gets the Chain ID of this monomer.- Specified by:
getChainID
in interfaceIPDBMonomer
- Overrides:
getChainID
in classPDBMonomer
- Returns:
- the Chain ID of this monomer
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