Uses of Class
org.openscience.cdk.interfaces.IBond.Order

Packages that use IBond.Order

Package	Description
org.openscience.cdk
org.openscience.cdk.debug
org.openscience.cdk.interfaces
org.openscience.cdk.isomorphism.matchers
org.openscience.cdk.isomorphism.matchers.smarts
org.openscience.cdk.libio.jena
org.openscience.cdk.renderer.generators
org.openscience.cdk.silent
org.openscience.cdk.smsd.filters
org.openscience.cdk.smsd.helper
org.openscience.cdk.smsd.tools
org.openscience.cdk.tools
org.openscience.cdk.tools.diff.tree
org.openscience.cdk.tools.manipulator

Uses of IBond.Order in org.openscience.cdk

Fields in org.openscience.cdk declared as IBond.Order

Modifier and Type	Field and Description
static IBond.Order	CDKConstants.BONDORDER_DOUBLE Deprecated. Use IBond.Order DOUBLE directly.
static IBond.Order	CDKConstants.BONDORDER_QUADRUPLE Deprecated. Use IBond.Order QUADRUPLE directly.
static IBond.Order	CDKConstants.BONDORDER_SINGLE Deprecated. Use IBond.Order SINGLE directly.
static IBond.Order	CDKConstants.BONDORDER_TRIPLE Deprecated. Use IBond.Order TRIPLE directly.
protected IBond.Order	Bond.order The bond order of this bond.

Methods in org.openscience.cdk that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	AtomType.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	AtomRef.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	AtomContainer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	AtomContainer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	Bond.getOrder() Returns the bond order of this bond.
IBond.Order	BondRef.getOrder() Returns the bond order of this bond.

Methods in org.openscience.cdk with parameters of type IBond.Order

Modifier and Type	Method and Description
void	AtomContainer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	AtomContainer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	AtomType.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	AtomRef.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	Bond.setOrder(IBond.Order order) Sets the bond order of this bond.
void	BondRef.setOrder(IBond.Order order) Sets the bond order of this bond.

Constructors in org.openscience.cdk with parameters of type IBond.Order

Constructor and Description
Bond(IAtom[] atoms, IBond.Order order) Constructs a multi-center bond, with a specified order and no stereo information.
Bond(IAtom atom1, IAtom atom2, IBond.Order order) Constructs a bond with a given order.
Bond(IAtom atom1, IAtom atom2, IBond.Order order, IBond.Stereo stereo) Constructs a bond with a given order and stereo orientation from an array of atoms.

Uses of IBond.Order in org.openscience.cdk.debug

Methods in org.openscience.cdk.debug that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	DebugAtom.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	DebugPseudoAtom.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	DebugFragmentAtom.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	DebugAtomType.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	DebugStrand.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugRing.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugCrystal.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugAminoAcid.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugPolymer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugBioPolymer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugMonomer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugAtomContainer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugStrand.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugRing.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugCrystal.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugAminoAcid.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugPolymer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugBioPolymer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugMonomer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugAtomContainer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	DebugBond.getOrder() Returns the bond order of this bond.

Methods in org.openscience.cdk.debug with parameters of type IBond.Order

Modifier and Type	Method and Description
void	DebugStrand.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugRing.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugCrystal.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugAminoAcid.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugPolymer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugBioPolymer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugMonomer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugAtomContainer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	DebugStrand.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugRing.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugCrystal.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugAminoAcid.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugPolymer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugBioPolymer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugMonomer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugAtomContainer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	DebugAtom.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	DebugPseudoAtom.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	DebugFragmentAtom.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	DebugAtomType.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	DebugBond.setOrder(IBond.Order order) Sets the bond order of this bond.

Constructors in org.openscience.cdk.debug with parameters of type IBond.Order

Constructor and Description
DebugBond(IAtom[] atoms, IBond.Order order)
DebugBond(IAtom atom1, IAtom atom2, IBond.Order order)
DebugBond(IAtom atom1, IAtom atom2, IBond.Order order, IBond.Stereo stereo)

Uses of IBond.Order in org.openscience.cdk.interfaces

Methods in org.openscience.cdk.interfaces that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	IAtomType.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	IAtomContainer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	IAtomContainer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	IBond.getOrder() Returns the bond order of this bond.
static IBond.Order	IBond.Order.valueOf(String name) Returns the enum constant of this type with the specified name.
static IBond.Order[]	IBond.Order.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.openscience.cdk.interfaces with parameters of type IBond.Order

Modifier and Type	Method and Description
void	IAtomContainer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	IAtomContainer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	IAtomType.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	IBond.setOrder(IBond.Order order) Sets the bond order of this bond.

Uses of IBond.Order in org.openscience.cdk.isomorphism.matchers

Fields in org.openscience.cdk.isomorphism.matchers declared as IBond.Order

Modifier and Type	Field and Description
protected IBond.Order	QueryBond.order The bond order of this query bond.

Methods in org.openscience.cdk.isomorphism.matchers that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	QueryAtom.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	QueryAtomContainer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	QueryAtomContainer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	QueryBond.getOrder() Returns the query bond order of this query bond.

Methods in org.openscience.cdk.isomorphism.matchers with parameters of type IBond.Order

Modifier and Type	Method and Description
void	QueryAtomContainer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	QueryAtomContainer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	QueryAtom.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	QueryBond.setOrder(IBond.Order order) Sets the bond order of this query bond.

Constructors in org.openscience.cdk.isomorphism.matchers with parameters of type IBond.Order

Constructor and Description
OrderQueryBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated.
OrderQueryBondOrderOnly(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated.
QueryBond(IAtom[] atoms, IBond.Order order, IChemObjectBuilder builder) Constructs a multi-center query bond, with a specified order and no stereo information.
QueryBond(IAtom atom1, IAtom atom2, IBond.Order order, IBond.Stereo stereo, IChemObjectBuilder builder) Constructs a query bond with a given order and stereo orientation from an array of atoms.
QueryBond(IAtom atom1, IAtom atom2, IBond.Order order, IChemObjectBuilder builder) Constructs a query bond with a given order.

Uses of IBond.Order in org.openscience.cdk.isomorphism.matchers.smarts

Constructors in org.openscience.cdk.isomorphism.matchers.smarts with parameters of type IBond.Order

Constructor and Description
AnyOrderQueryBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated. Creates a new instance.
AromaticOrSingleQueryBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated. Creates a new instance
AromaticQueryBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated. Creates a new instance
OrderQueryBond(IBond.Order order, IChemObjectBuilder builder) Deprecated. Creates a new instance
SMARTSBond(IQueryAtom atom1, IQueryAtom atom2, IBond.Order order, IChemObjectBuilder builder) Deprecated.

Uses of IBond.Order in org.openscience.cdk.libio.jena

Methods in org.openscience.cdk.libio.jena that return IBond.Order

Modifier and Type	Method and Description
static IBond.Order	Convertor.resource2Order(com.hp.hpl.jena.rdf.model.Resource rdfOrder) Converts a Resource object into the matching IBond.Order.

Methods in org.openscience.cdk.libio.jena with parameters of type IBond.Order

Modifier and Type	Method and Description
static com.hp.hpl.jena.rdf.model.Resource	Convertor.order2Resource(IBond.Order order) Create the Resource matching the given IBond.Order.

Uses of IBond.Order in org.openscience.cdk.renderer.generators

Methods in org.openscience.cdk.renderer.generators with parameters of type IBond.Order

Modifier and Type	Method and Description
IRenderingElement	BasicBondGenerator.generateBondElement(IBond bond, IBond.Order type, RendererModel model) Generate a LineElement or an ElementGroup of LineElements for this bond.

Uses of IBond.Order in org.openscience.cdk.silent

Fields in org.openscience.cdk.silent declared as IBond.Order

Modifier and Type	Field and Description
protected IBond.Order	Bond.order The bond order of this bond.

Methods in org.openscience.cdk.silent that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	AtomType.getMaxBondOrder() Gets the MaxBondOrder attribute of the AtomType object.
IBond.Order	AtomContainer.getMaximumBondOrder(IAtom atom) Returns the maximum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	AtomContainer.getMinimumBondOrder(IAtom atom) Returns the minimum bond order that this atom currently has in the context of this AtomContainer.
IBond.Order	Bond.getOrder() Returns the bond order of this bond.

Methods in org.openscience.cdk.silent with parameters of type IBond.Order

Modifier and Type	Method and Description
void	AtomContainer.addBond(int atom1, int atom2, IBond.Order order) Adds a bond to this container.
void	AtomContainer.addBond(int atom1, int atom2, IBond.Order order, IBond.Stereo stereo) Adds a bond to this container.
void	AtomType.setMaxBondOrder(IBond.Order maxBondOrder) Sets the MaxBondOrder attribute of the AtomType object.
void	Bond.setOrder(IBond.Order order) Sets the bond order of this bond.

Constructors in org.openscience.cdk.silent with parameters of type IBond.Order

Constructor and Description
Bond(IAtom[] atoms, IBond.Order order) Constructs a multi-center bond, with a specified order and no stereo information.
Bond(IAtom atom1, IAtom atom2, IBond.Order order) Constructs a bond with a given order.
Bond(IAtom beg, IAtom end, IBond.Order order, IBond.Stereo stereo) Constructs a bond with a given order and stereo orientation from an array of atoms.

Uses of IBond.Order in org.openscience.cdk.smsd.filters

Methods in org.openscience.cdk.smsd.filters that return IBond.Order

Modifier and Type	Method and Description
static IBond.Order	ChemicalFilters.convertOrder(double srcOrder) Deprecated. Get bond order value as IBond.Order.

Uses of IBond.Order in org.openscience.cdk.smsd.helper

Methods in org.openscience.cdk.smsd.helper that return IBond.Order

Modifier and Type	Method and Description
IBond.Order	BondEnergy.getBondOrder() Deprecated. Returns the bond order for this bond type energy.

Constructors in org.openscience.cdk.smsd.helper with parameters of type IBond.Order

Constructor and Description
BondEnergy(String symbol1, String symbol2, IBond.Order order, int energy) Deprecated. Creates a new bond energy for the given elements and bond order.

Uses of IBond.Order in org.openscience.cdk.smsd.tools

Methods in org.openscience.cdk.smsd.tools with parameters of type IBond.Order

Modifier and Type	Method and Description
int	BondEnergies.getEnergies(IAtom sourceAtom, IAtom targetAtom, IBond.Order bondOrder) Deprecated. Returns bond energy for a bond type, given atoms and bond type
int	BondEnergies.getEnergies(String sourceAtom, String targetAtom, IBond.Order bondOrder) Deprecated. Returns bond energy for a bond type, given atoms and bond type

Uses of IBond.Order in org.openscience.cdk.tools

Methods in org.openscience.cdk.tools with parameters of type IBond.Order

Modifier and Type	Method and Description
int	SmilesValencyChecker.calculateNumberOfImplicitHydrogens(IAtom atom, double bondOrderSum, IBond.Order maxBondOrder, int neighbourCount) Calculates the number of hydrogens that can be added to the given atom to fullfil the atom's valency.
boolean	SmilesValencyChecker.couldMatchAtomType(IAtom atom, double bondOrderSum, IBond.Order maxBondOrder, IAtomType type) Determines if the atom can be of type AtomType.

Uses of IBond.Order in org.openscience.cdk.tools.diff.tree

Methods in org.openscience.cdk.tools.diff.tree with parameters of type IBond.Order

Modifier and Type	Method and Description
static IDifference	BondOrderDifference.construct(String name, IBond.Order first, IBond.Order second) Constructs a new IDifference object.

Uses of IBond.Order in org.openscience.cdk.tools.manipulator

Methods in org.openscience.cdk.tools.manipulator that return IBond.Order

Modifier and Type	Method and Description
static IBond.Order	BondManipulator.createBondOrder(double bondOrder) Convenience method to convert a double into an IBond.Order.
static IBond.Order	BondManipulator.decreaseBondOrder(IBond.Order oldOrder) Returns the IBond.Order one lower.
static IBond.Order	AtomContainerManipulator.getMaximumBondOrder(IAtomContainer container)
static IBond.Order	BondManipulator.getMaximumBondOrder(IBond.Order firstOrder, IBond.Order secondOrder) Returns the maximum bond order for the two bond orders.
static IBond.Order	BondManipulator.getMaximumBondOrder(IBond firstBond, IBond secondBond) Returns the maximum bond order for the two bonds.
static IBond.Order	BondManipulator.getMaximumBondOrder(Iterator<IBond> bonds) Returns the maximum bond order for a List of bonds, given an iterator to the list.
static IBond.Order	BondManipulator.getMaximumBondOrder(List<IBond> bonds) Returns the maximum bond order for a List of bonds.
static IBond.Order	BondManipulator.getMinimumBondOrder(Iterator<IBond> bonds) Returns the minimum bond order for a List of bonds, given an iterator to the list.
static IBond.Order	BondManipulator.getMinimumBondOrder(List<IBond> bonds) Returns the minimum bond order for a List of bonds.
static IBond.Order	BondManipulator.increaseBondOrder(IBond.Order oldOrder) Returns the IBond.Order one higher.

Methods in org.openscience.cdk.tools.manipulator with parameters of type IBond.Order

Modifier and Type	Method and Description
static IBond.Order	BondManipulator.decreaseBondOrder(IBond.Order oldOrder) Returns the IBond.Order one lower.
static double	BondManipulator.destroyBondOrder(IBond.Order bondOrder) Deprecated. use IBond.Order.numeric().doubleValue() instead
static IBond.Order	BondManipulator.getMaximumBondOrder(IBond.Order firstOrder, IBond.Order secondOrder) Returns the maximum bond order for the two bond orders.
static IBond.Order	BondManipulator.increaseBondOrder(IBond.Order oldOrder) Returns the IBond.Order one higher.
static boolean	BondManipulator.isHigherOrder(IBond.Order first, IBond.Order second) Returns true if the first bond has a higher bond order than the second bond.
static boolean	BondManipulator.isLowerOrder(IBond.Order first, IBond.Order second) Returns true if the first bond has a lower bond order than the second bond.