org.openscience.cdk.renderer.generators

Class BasicBondGenerator

java.lang.Object

org.openscience.cdk.renderer.generators.BasicBondGenerator

All Implemented Interfaces:

IGenerator<IAtomContainer>

Direct Known Subclasses:

RingGenerator

public class BasicBondGenerator
extends Object
implements IGenerator<IAtomContainer>

Generator for elements from bonds. Only two-atom bonds are supported by this generator.

Source code:

master

Belongs to CDK module:

renderbasic

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	BasicBondGenerator.BondDistance The gap between double and triple bond lines on the screen.
static class	BasicBondGenerator.BondWidth The width on screen of a bond.
static class	BasicBondGenerator.DefaultBondColor The color to draw bonds if not other color is given.
static class	BasicBondGenerator.TowardsRingCenterProportion The proportion to move in towards the ring center.
static class	BasicBondGenerator.WedgeWidth The width on screen of the fat end of a wedge bond.

Field Summary

Fields

Modifier and Type	Field and Description
protected IRingSet	ringSet Necessary for calculating inner-ring bond elements.

Constructor Summary

Constructors

Constructor and Description
BasicBondGenerator() An empty constructor necessary for reflection.

Method Summary

Modifier and Type	Method and Description
protected boolean	bindsHydrogen(IBond bond) Check to see if any of the atoms in this bond are hydrogen atoms.
IRenderingElement	generate(IAtomContainer container, RendererModel model) Converts a IChemObject from the chemical data model into something that can be drawn in the chemical drawing.
IRenderingElement	generate(IBond currentBond, RendererModel model) Generate rendering element(s) for the current bond, including ring elements if this bond is part of a ring.
IRenderingElement	generateBond(IBond bond, RendererModel model) Generate stereo or bond elements for this bond.
IRenderingElement	generateBondElement(IBond bond, IBond.Order type, RendererModel model) Generate a LineElement or an ElementGroup of LineElements for this bond.
IRenderingElement	generateBondElement(IBond bond, RendererModel model) Generate rendering elements for a bond, without ring elements but considering the type of the bond (single, double, triple).
LineElement	generateInnerElement(IBond bond, IRing ring, RendererModel model) Make the inner ring bond, which is slightly shorter than the outer bond.
IRenderingElement	generateRingElements(IBond bond, IRing ring, RendererModel model) Generate ring elements, such as inner-ring bonds or ring stereo elements.
Color	getColorForBond(IBond bond, RendererModel model) Determine the color of a bond, returning either the default color, the override color or whatever is in the color hash for that bond.
List<IGeneratorParameter<?>>	getParameters() Returns the list of IGeneratorParameter for this particular generator.
protected IRingSet	getRingSet(IAtomContainer atomContainer) Determine the ring set for this atom container.
double	getWidthForBond(IBond bond, RendererModel model) Determine the width of a bond, returning either the width defined in the model, or the override width.
void	setOverrideBondWidth(double bondWidth) Set the width to use for all bonds, overriding any standard bond widths.
void	setOverrideColor(Color color) Set the color to use for all bonds, overriding the standard bond colors.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ringSet

protected IRingSet ringSet

Necessary for calculating inner-ring bond elements.

Constructor Detail

BasicBondGenerator

public BasicBondGenerator()

An empty constructor necessary for reflection.

Method Detail

setOverrideColor

public void setOverrideColor(Color color)

Set the color to use for all bonds, overriding the standard bond colors.

Parameters:

color - the override color

setOverrideBondWidth

public void setOverrideBondWidth(double bondWidth)

Set the width to use for all bonds, overriding any standard bond widths.

Parameters:

bondWidth -

getRingSet

protected IRingSet getRingSet(IAtomContainer atomContainer)

Determine the ring set for this atom container.

Parameters:

atomContainer - the atom container to find rings in.

Returns:

the rings of the molecule

getColorForBond

public Color getColorForBond(IBond bond,
                             RendererModel model)

Determine the color of a bond, returning either the default color, the override color or whatever is in the color hash for that bond.

Parameters:

bond - the bond we are generating an element for

model - the rendering model

Returns:

the color to paint the bond

getWidthForBond

public double getWidthForBond(IBond bond,
                              RendererModel model)

Determine the width of a bond, returning either the width defined in the model, or the override width. Note that this will be scaled to the space of the model.

Parameters:

bond - the bond to determine the width for

model - the renderer model

Returns:

a double in chem-model space

generate

public IRenderingElement generate(IAtomContainer container,
                                  RendererModel model)

Converts a IChemObject from the chemical data model into something that can be drawn in the chemical drawing.

Specified by:

generate in interface IGenerator<IAtomContainer>

Parameters:

container - the chemical entity to be depicted

model - the rendering parameters

Returns:

a drawable chemical depiction component

generate

public IRenderingElement generate(IBond currentBond,
                                  RendererModel model)

Generate rendering element(s) for the current bond, including ring elements if this bond is part of a ring.

Parameters:

currentBond - the bond to use when generating elements

model - the renderer model

Returns:

one or more rendering elements

generateBondElement

public IRenderingElement generateBondElement(IBond bond,
                                             RendererModel model)

Generate rendering elements for a bond, without ring elements but considering the type of the bond (single, double, triple).

Parameters:

bond - the bond to use when generating elements

model - the renderer model

Returns:

one or more rendering elements

generateBondElement

public IRenderingElement generateBondElement(IBond bond,
                                             IBond.Order type,
                                             RendererModel model)

Generate a LineElement or an ElementGroup of LineElements for this bond. This version should be used if you want to override the type - for example, for ring double bonds.

Parameters:

bond - the bond to generate for

type - the type of the bond - single, double, etc

model - the renderer model

Returns:

one or more rendering elements

generateRingElements

public IRenderingElement generateRingElements(IBond bond,
                                              IRing ring,
                                              RendererModel model)

Generate ring elements, such as inner-ring bonds or ring stereo elements.

Parameters:

bond - the ring bond to use when generating elements

ring - the ring that the bond is in

model - the renderer model

Returns:

one or more rendering elements

generateInnerElement

public LineElement generateInnerElement(IBond bond,
                                        IRing ring,
                                        RendererModel model)

Make the inner ring bond, which is slightly shorter than the outer bond.

Parameters:

bond - the ring bond

ring - the ring that the bond is in

model - the renderer model

Returns:

the line element

bindsHydrogen

protected boolean bindsHydrogen(IBond bond)

Check to see if any of the atoms in this bond are hydrogen atoms.

Parameters:

bond - the bond to check

Returns:

true if any atom has an element symbol of "H"

generateBond

public IRenderingElement generateBond(IBond bond,
                                      RendererModel model)

Generate stereo or bond elements for this bond.

Parameters:

bond - the bond to use when generating elements

model - the renderer model

Returns:

one or more rendering elements

getParameters

public List<IGeneratorParameter<?>> getParameters()

Returns the list of IGeneratorParameter for this particular generator.

Specified by:

getParameters in interface IGenerator<IAtomContainer>

Returns:

a List of IGeneratorParameters