Uses of Class
org.openscience.cdk.silent.ChemObject

Packages that use ChemObject

Package	Description
org.openscience.cdk.silent

Uses of ChemObject in org.openscience.cdk.silent

Subclasses of ChemObject in org.openscience.cdk.silent

Modifier and Type	Class	Description
class	AminoAcid	A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
class	Atom	Represents the idea of an chemical atom.
class	AtomContainer	Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
class	AtomContainerSet	A set of AtomContainers.
class	AtomType	The base class for atom types.
class	BioPolymer	A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
class	Bond	Implements the concept of a covalent bond between two or more atoms.
class	ChemFile	A Object containing a number of ChemSequences.
class	ChemModel	An object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, fragments, etc.
class	ChemSequence	A sequence of ChemModels, which can, for example, be used to store the course of a reaction.
class	Crystal	Class representing a molecular crystal.
class	ElectronContainer	Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
class	Element	Implements the idea of an element in the periodic table.
class	FragmentAtom	Class to represent an IPseudoAtom which embeds an IAtomContainer.
class	Isotope	Used to store and retrieve data of a particular isotope.
class	LonePair	A LonePair is an orbital primarily located with one Atom, containing two electrons.
class	Mapping	A Mapping is an relation between two ChemObjects in a non-chemical entity.
class	Monomer	A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
class	PDBAtom	Represents the idea of an atom as used in PDB files.
class	PDBMonomer	Represents the idea of an monomer as used in PDB files.
class	PDBPolymer	An entry in the PDB database.
class	PDBStructure	Holder for secundary protein structure elements.
class	Polymer	Subclass of Molecule to store Polymer specific attributes that a Polymer has.
class	PseudoAtom	Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.
class	Reaction	Represents the idea of a chemical reaction.
class	ReactionScheme	Classes that extends the definition of reaction to a scheme.
class	ReactionSet	A set of reactions, for example those taking part in a reaction.
class	Ring	Class representing a ring structure in a molecule.
class	RingSet	Maintains a set of Ring objects.
class	SingleElectron	A Single Electron is an orbital which is occupied by only one electron.
class	Strand	A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.
class	Substance	An implementation of the ISubstance interface.