Uses of Class
org.openscience.cdk.silent.ChemObject
Packages that use ChemObject
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Uses of ChemObject in org.openscience.cdk.silent
Subclasses of ChemObject in org.openscience.cdk.silentModifier and TypeClassDescriptionclass
A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.class
Represents the idea of an chemical atom.class
Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.class
A set of AtomContainers.class
The base class for atom types.class
A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.class
Implements the concept of a covalent bond between two or more atoms.class
A Object containing a number of ChemSequences.class
An object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, fragments, etc.class
A sequence of ChemModels, which can, for example, be used to store the course of a reaction.class
Class representing a molecular crystal.class
Base class for entities containing electrons, like bonds, orbitals, lone-pairs.class
Implements the idea of an element in the periodic table.class
Class to represent an IPseudoAtom which embeds an IAtomContainer.class
Used to store and retrieve data of a particular isotope.class
A LonePair is an orbital primarily located with one Atom, containing two electrons.class
A Mapping is an relation between two ChemObjects in a non-chemical entity.class
A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.class
Represents the idea of an atom as used in PDB files.class
Represents the idea of an monomer as used in PDB files.class
An entry in the PDB database.class
Holder for secundary protein structure elements.class
Subclass of Molecule to store Polymer specific attributes that a Polymer has.class
Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.class
Represents the idea of a chemical reaction.class
Classes that extends the definition of reaction to a scheme.class
A set of reactions, for example those taking part in a reaction.class
Class representing a ring structure in a molecule.class
Maintains a set of Ring objects.class
A Single Electron is an orbital which is occupied by only one electron.class
A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.class
An implementation of theISubstance
interface.