Uses of Class
Uses of ChemObject in org.openscience.cdk.silentModifier and TypeClassDescription
classA AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
classRepresents the idea of an chemical atom.
classBase class for all chemical objects that maintain a list of Atoms and ElectronContainers.
classA set of AtomContainers.
classThe base class for atom types.
classA BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
classImplements the concept of a covalent bond between two or more atoms.
classA Object containing a number of ChemSequences.
classAn object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, fragments, etc.
classA sequence of ChemModels, which can, for example, be used to store the course of a reaction.
classClass representing a molecular crystal.
classBase class for entities containing electrons, like bonds, orbitals, lone-pairs.
classImplements the idea of an element in the periodic table.
classClass to represent an IPseudoAtom which embeds an IAtomContainer.
classUsed to store and retrieve data of a particular isotope.
classA LonePair is an orbital primarily located with one Atom, containing two electrons.
classA Mapping is an relation between two ChemObjects in a non-chemical entity.
classA Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
classRepresents the idea of an atom as used in PDB files.
classRepresents the idea of an monomer as used in PDB files.
classAn entry in the PDB database.
classHolder for secundary protein structure elements.
classSubclass of Molecule to store Polymer specific attributes that a Polymer has.
classRepresents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.
classRepresents the idea of a chemical reaction.
classClasses that extends the definition of reaction to a scheme.
classA set of reactions, for example those taking part in a reaction.
classClass representing a ring structure in a molecule.
classMaintains a set of Ring objects.
classA Single Electron is an orbital which is occupied by only one electron.
classA Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.
classAn implementation of the