Uses of Class
org.openscience.cdk.silent.ChemObject

Packages that use ChemObject
Package
Description
 
  • Uses of ChemObject in org.openscience.cdk.silent

    Modifier and Type
    Class
    Description
    class 
    A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
    class 
    Represents the idea of an chemical atom.
    class 
    Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
    class 
    A set of AtomContainers.
    class 
    The base class for atom types.
    class 
    A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
    class 
    Implements the concept of a covalent bond between two or more atoms.
    class 
    A Object containing a number of ChemSequences.
    class 
    An object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, fragments, etc.
    class 
    A sequence of ChemModels, which can, for example, be used to store the course of a reaction.
    class 
    Class representing a molecular crystal.
    class 
    Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
    class 
    Implements the idea of an element in the periodic table.
    class 
    Class to represent an IPseudoAtom which embeds an IAtomContainer.
    class 
    Used to store and retrieve data of a particular isotope.
    class 
    A LonePair is an orbital primarily located with one Atom, containing two electrons.
    class 
    A Mapping is an relation between two ChemObjects in a non-chemical entity.
    class 
    A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
    class 
    Represents the idea of an atom as used in PDB files.
    class 
    Represents the idea of an monomer as used in PDB files.
    class 
    An entry in the PDB database.
    class 
    Holder for secundary protein structure elements.
    class 
    Subclass of Molecule to store Polymer specific attributes that a Polymer has.
    class 
    Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.
    class 
    Represents the idea of a chemical reaction.
    class 
    Classes that extends the definition of reaction to a scheme.
    class 
    A set of reactions, for example those taking part in a reaction.
    class 
    Class representing a ring structure in a molecule.
    class 
    Maintains a set of Ring objects.
    class 
    A Single Electron is an orbital which is occupied by only one electron.
    class 
    A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.
    class 
    An implementation of the ISubstance interface.