Mapping (cdk 2.9 API)

java.lang.Object
- org.openscience.cdk.silent.ChemObject
- - org.openscience.cdk.silent.Mapping

All Implemented Interfaces:

Serializable, Cloneable, ICDKObject, IChemObject, IMapping
```
public class Mapping
extends ChemObject
implements Serializable, Cloneable, IMapping
```
A Mapping is an relation between two ChemObjects in a non-chemical entity. It is not a Bond, nor a Association, merely a relation. An example of such a mapping, is the mapping between corresponding atoms in a Reaction.

Author:

Egon Willighagen

See Also:

Serialized Form

Source code:
main

Belongs to CDK module:
silent

Keywords:

reaction, atom mapping

Created on:

2003-08-16

Constructor Summary

Constructors
Constructor Description

Mapping(IChemObject objectOne, IChemObject objectTwo)
Constructs an unconnected lone pair.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Object`	`clone()`	Clones this `Mapping` and the mapped `IChemObject`s.
`IChemObject`	`getChemObject(int pos)`	Retrieves the first or second of the related IChemObjects.
`Iterable<IChemObject>`	`relatedChemObjects()`	Returns an Iterable to the two IChemObjects.

Methods inherited from class org.openscience.cdk.silent.ChemObject
addListener, addProperties, compare, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject
getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject
addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

- Constructor Detail
  - Mapping
```
public Mapping(IChemObject objectOne,
               IChemObject objectTwo)
```
    Constructs an unconnected lone pair.
    
    Parameters:
    
    objectOne - The first IChemObject of the mapping
    
    objectTwo - The second IChemObject of the mapping
- Method Detail
  - relatedChemObjects
```
public Iterable<IChemObject> relatedChemObjects()
```
    Returns an Iterable to the two IChemObjects. Iterable.remove() is not implemented.
    
    Specified by:
    
    relatedChemObjects in interface IMapping
    
    Returns:
    
    An Iterable to two IChemObjects that define the mapping
  - getChemObject
```
public IChemObject getChemObject(int pos)
```
    Retrieves the first or second of the related IChemObjects.
    
    Specified by:
    
    getChemObject in interface IMapping
    
    Parameters:
    
    pos - The position of the IChemObject.
    
    Returns:
    
    The IChemObject to retrieve.
  - clone
```
public Object clone()
             throws CloneNotSupportedException
```
    Clones this Mapping and the mapped IChemObjects.
    
    Specified by:
    
    clone in interface IChemObject
    
    Overrides:
    
    clone in class ChemObject
    
    Returns:
    
    The cloned object
    
    Throws:
    
    CloneNotSupportedException - if the IChemObject cannot be cloned