Package org.openscience.cdk.silent

Class ReactionSet

java.lang.Object
org.openscience.cdk.silent.ChemObject
org.openscience.cdk.silent.ReactionSet
All Implemented Interfaces:
Serializable, Cloneable, ICDKObject, IChemObject, IChemObjectListener, IReactionSet
Direct Known Subclasses:
ReactionScheme
public class ReactionSet extends ChemObject implements Serializable, IReactionSet, IChemObjectListener, Cloneable
A set of reactions, for example those taking part in a reaction. To retrieve the reactions from the set, there are two options: 
 Iterator reactions = reactionSet.reactions();
 while (reactions.hasNext()) {
     IReaction reaction = (IReaction)reactions.next();
 }
and 

 for (int i=0; i < reactionSet.getReactionCount(); i++) {
    IReaction reaction = reactionSet.getReaction(i);
 }
See Also:
Source code:
main
Belongs to CDK module:
silent
Keywords:
reaction

  • Constructor Details

    • ReactionSet

      public ReactionSet()
      Constructs an empty ReactionSet.

  • Method Details

    • addReaction

      public void addReaction(IReaction reaction)
      Adds an reaction to this container.
      Specified by:
      addReaction in interface IReactionSet
      Parameters:
      reaction - The reaction to be added to this container

    • removeReaction

      public void removeReaction(int pos)
      Remove a reaction from this set.
      Specified by:
      removeReaction in interface IReactionSet
      Parameters:
      pos - The position of the reaction to be removed.

    • getReaction

      public IReaction getReaction(int number)
      Returns the Reaction at position number in the container.
      Specified by:
      getReaction in interface IReactionSet
      Parameters:
      number - The position of the Reaction to be returned
      Returns:
      The Reaction at position number

    • reactions

      public Iterable<IReaction> reactions()
      Get an iterator for this reaction set.
      Specified by:
      reactions in interface IReactionSet
      Returns:
      A new Iterator for this ReactionSet.

    • getReactionCount

      public int getReactionCount()
      Returns the number of Reactions in this Container.
      Specified by:
      getReactionCount in interface IReactionSet
      Returns:
      The number of Reactions in this Container

    • toString

      public String toString()
      Description copied from interface: IChemObject
      Returns a one line description of this IChemObject.
      Specified by:
      toString in interface IChemObject
      Overrides:
      toString in class Object
      Returns:
      a String representation of this object

    • clone

      public Object clone() throws CloneNotSupportedException
      Clones this ReactionSet and the contained Reactions too.
      Specified by:
      clone in interface IChemObject
      Overrides:
      clone in class ChemObject
      Returns:
      The cloned ReactionSet
      Throws:
      CloneNotSupportedException - if the IChemObject cannot be cloned

    • removeAllReactions

      public void removeAllReactions()
      Removes all Reactions from this container.
      Specified by:
      removeAllReactions in interface IReactionSet

    • stateChanged

      public void stateChanged(IChemObjectChangeEvent event)
      Description copied from interface: IChemObjectListener
      Called by objects to notify objects that implemented this interface and registered with them as ChemObjectListeners.
      Specified by:
      stateChanged in interface IChemObjectListener
      Parameters:
      event - a ChemObjectChangeEvent object

    • removeReaction

      public void removeReaction(IReaction relevantReaction)
      Description copied from interface: IReactionSet
      Removes all instances of a reaction from this IReactionSet.
      Specified by:
      removeReaction in interface IReactionSet
      Parameters:
      relevantReaction - the reaction to remove

    • isEmpty

      public boolean isEmpty()
      Returns true if this IReactionSet is empty.
      Specified by:
      isEmpty in interface IReactionSet
      Returns:
      a boolean indicating if this ring set no reactions