Uses of Package
org.openscience.cdk

Packages that use org.openscience.cdk
  • Class
    Description
    Represents the idea of an chemical atom.
    Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
    A set of AtomContainers.
    The base class for atom types.
    The base class for all chemical objects in this cdk.
    A class which encapsulates the information about an interface (of this implementation) and the parameter types of the constructor.
    An interface that allows posterior modification of an instance after it has been created.
    An interface that wraps object creation via the DynamicFactory.Creator.create(Object[]) method.
    An interface that can provide which interfaces the given class implements.
    Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
    Implements the idea of an element in the periodic table.
    Used to store and retrieve data of a particular isotope.
    A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
    Subclass of Molecule to store Polymer specific attributes that a Polymer has.
    Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.
     
    A set of reactions, for example those taking part in a reaction.
  • Class
    Description
    A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
    Represents the idea of an chemical atom.
    Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
    A set of AtomContainers.
    The base class for atom types.
    A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
    Implements the concept of a covalent bond between two or more atoms.
    A Object containing a number of ChemSequences.
    An object containing multiple MoleculeSet and the other lower level concepts like rings, sequences, fragments, etc.
    The base class for all chemical objects in this cdk.
    A sequence of ChemModels, which can, for example, be used to store the course of a reaction.
    Class representing a molecular crystal.
    Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
    Implements the idea of an element in the periodic table.
    Class to represent an IPseudoAtom which embeds an IAtomContainer.
    Used to store and retrieve data of a particular isotope.
    A LonePair is an orbital primarily located with one Atom, containing two electrons.
    A Mapping is an relation between two ChemObjects in a non-chemical entity.
    A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
    Subclass of Molecule to store Polymer specific attributes that a Polymer has.
    Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.
    Represents the idea of a chemical reaction.
    Classes that extends the definition of reaction to a scheme.
    A set of reactions, for example those taking part in a reaction.
    Class representing a ring structure in a molecule.
    Maintains a set of Ring objects.
    A Single Electron is an orbital which is occupied by only one electron.
    A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.
  • Class
    Description
    A Object containing a number of ChemSequences.
  • Class
    Description
    Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
    The base class for all chemical objects in this cdk.
  • Class
    Description
    Represents the idea of an chemical atom.
    The base class for atom types.
    Implements the concept of a covalent bond between two or more atoms.
    The base class for all chemical objects in this cdk.
    Base class for entities containing electrons, like bonds, orbitals, lone-pairs.
    Implements the idea of an element in the periodic table.
    Used to store and retrieve data of a particular isotope.
  • Class
    Description
    Represents the idea of an chemical atom.
    Base class for all chemical objects that maintain a list of Atoms and ElectronContainers.
    The base class for atom types.
    A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
    The base class for all chemical objects in this cdk.
    Implements the idea of an element in the periodic table.
    Used to store and retrieve data of a particular isotope.
    A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
    Subclass of Molecule to store Polymer specific attributes that a Polymer has.
    A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.
  • Class
    Description
    Interface that is used to describe the specification of a certain implementation of an algorithm.
  • Class
    Description
    The base class for all chemical objects in this cdk.
    Interface that is used to describe the specification of a certain implementation of an algorithm.
    A set of reactions, for example those taking part in a reaction.
  • Class
    Description
    A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.