Uses of Class
org.openscience.cdk.AtomType

Packages that use AtomType

Package	Description
org.openscience.cdk
org.openscience.cdk.debug
org.openscience.cdk.pharmacophore
org.openscience.cdk.protein.data

Uses of AtomType in org.openscience.cdk

Subclasses of AtomType in org.openscience.cdk

Modifier and Type	Class	Description
class	Atom	Represents the idea of an chemical atom.
class	EnzymeResidueLocator	Atom that represents part of an residue in an enzyme, like Arg255.
class	FragmentAtom	Class to represent an IPseudoAtom which embeds an IAtomContainer.
class	PseudoAtom	Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.

Uses of AtomType in org.openscience.cdk.debug

Subclasses of AtomType in org.openscience.cdk.debug

Modifier and Type	Class	Description
class	DebugAtom	Debugging data class.
class	DebugAtomType	Debugging data class.
class	DebugFragmentAtom	Class to represent an IPseudoAtom which embeds an IAtomContainer.
class	DebugPDBAtom	Debugging data class.
class	DebugPseudoAtom	Debugging data class.

Uses of AtomType in org.openscience.cdk.pharmacophore

Subclasses of AtomType in org.openscience.cdk.pharmacophore

Modifier and Type	Class	Description
class	PharmacophoreAtom	A representation of a pharmacophore group.
class	PharmacophoreQueryAtom	Represents a query pharmacophore group.

Uses of AtomType in org.openscience.cdk.protein.data

Subclasses of AtomType in org.openscience.cdk.protein.data

Modifier and Type	Class	Description
class	PDBAtom	Represents the idea of an atom as used in PDB files.