Uses of Class
org.openscience.cdk.AtomContainer

Packages that use AtomContainer

Package	Description
org.openscience.cdk
org.openscience.cdk.debug
org.openscience.cdk.libio.md
org.openscience.cdk.protein.data

Uses of AtomContainer in org.openscience.cdk

Subclasses of AtomContainer in org.openscience.cdk

Modifier and Type	Class	Description
class	AminoAcid	A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.
class	BioPolymer	A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.
class	Crystal	Class representing a molecular crystal.
class	Monomer	A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.
class	Polymer	Subclass of Molecule to store Polymer specific attributes that a Polymer has.
class	Ring	Class representing a ring structure in a molecule.
class	Strand	A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms.

Uses of AtomContainer in org.openscience.cdk.debug

Subclasses of AtomContainer in org.openscience.cdk.debug

Modifier and Type	Class	Description
class	DebugAminoAcid	Debugging data class.
class	DebugAtomContainer	Debugging data class.
class	DebugBioPolymer	Debugging data class.
class	DebugCrystal	Debugging data class.
class	DebugMonomer	Debugging data class.
class	DebugPDBMonomer	Debugging data class.
class	DebugPDBPolymer	Debugging data class.
class	DebugPolymer	Debugging data class.
class	DebugRing	Debugging data class.
class	DebugStrand	Debugging data class.

Uses of AtomContainer in org.openscience.cdk.libio.md

Subclasses of AtomContainer in org.openscience.cdk.libio.md

Modifier and Type	Class	Description
class	ChargeGroup	A ChargeGroup (CG) is a numbered collection of atoms in an MDMolecule.
class	MDMolecule
class	Residue	A residue is a named, numbered collection of atoms in an MDMolecule.

Uses of AtomContainer in org.openscience.cdk.protein.data

Subclasses of AtomContainer in org.openscience.cdk.protein.data

Modifier and Type	Class	Description
class	PDBMonomer	Represents the idea of an monomer as used in PDB files.
class	PDBPolymer	An entry in the PDB database.
class	PDBStrand	An entry in the PDB database.