Uses of Class
org.openscience.cdk.AtomContainer
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Packages that use AtomContainer Package Description org.openscience.cdk org.openscience.cdk.debug org.openscience.cdk.libio.md org.openscience.cdk.protein.data -
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Uses of AtomContainer in org.openscience.cdk
Subclasses of AtomContainer in org.openscience.cdk Modifier and Type Class Description class
AminoAcid
A AminoAcid is Monomer which stores additional amino acid specific informations, like the N-terminus atom.class
BioPolymer
A BioPolymer is a subclass of a Polymer which is supposed to store additional informations about the Polymer which are connected to BioPolymers.class
Crystal
Class representing a molecular crystal.class
Monomer
A Monomer is an AtomContainer which stores additional monomer specific informations for a group of Atoms.class
Polymer
Subclass of Molecule to store Polymer specific attributes that a Polymer has.class
Ring
Class representing a ring structure in a molecule.class
Strand
A Strand is an AtomContainer which stores additional strand specific informations for a group of Atoms. -
Uses of AtomContainer in org.openscience.cdk.debug
Subclasses of AtomContainer in org.openscience.cdk.debug Modifier and Type Class Description class
DebugAminoAcid
Debugging data class.class
DebugAtomContainer
Debugging data class.class
DebugBioPolymer
Debugging data class.class
DebugCrystal
Debugging data class.class
DebugMonomer
Debugging data class.class
DebugPDBMonomer
Debugging data class.class
DebugPDBPolymer
Debugging data class.class
DebugPolymer
Debugging data class.class
DebugRing
Debugging data class.class
DebugStrand
Debugging data class. -
Uses of AtomContainer in org.openscience.cdk.libio.md
Subclasses of AtomContainer in org.openscience.cdk.libio.md Modifier and Type Class Description class
ChargeGroup
A ChargeGroup (CG) is a numbered collection of atoms in an MDMolecule.class
MDMolecule
class
Residue
A residue is a named, numbered collection of atoms in an MDMolecule. -
Uses of AtomContainer in org.openscience.cdk.protein.data
Subclasses of AtomContainer in org.openscience.cdk.protein.data Modifier and Type Class Description class
PDBMonomer
Represents the idea of an monomer as used in PDB files.class
PDBPolymer
An entry in the PDB database.class
PDBStrand
An entry in the PDB database.
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