Uses of Class
org.openscience.cdk.Atom

Packages that use Atom

Package	Description
org.openscience.cdk
org.openscience.cdk.debug
org.openscience.cdk.pharmacophore
org.openscience.cdk.protein.data

Uses of Atom in org.openscience.cdk

Subclasses of Atom in org.openscience.cdk

Modifier and Type	Class	Description
class	EnzymeResidueLocator	Atom that represents part of an residue in an enzyme, like Arg255.
class	FragmentAtom	Class to represent an IPseudoAtom which embeds an IAtomContainer.
class	PseudoAtom	Represents the idea of a non-chemical atom-like entity, like Me, R, X, Phe, His, etc.

Uses of Atom in org.openscience.cdk.debug

Subclasses of Atom in org.openscience.cdk.debug

Modifier and Type	Class	Description
class	DebugAtom	Debugging data class.
class	DebugFragmentAtom	Class to represent an IPseudoAtom which embeds an IAtomContainer.
class	DebugPDBAtom	Debugging data class.
class	DebugPseudoAtom	Debugging data class.

Uses of Atom in org.openscience.cdk.pharmacophore

Subclasses of Atom in org.openscience.cdk.pharmacophore

Modifier and Type	Class	Description
class	PharmacophoreAtom	A representation of a pharmacophore group.
class	PharmacophoreQueryAtom	Represents a query pharmacophore group.

Uses of Atom in org.openscience.cdk.protein.data

Subclasses of Atom in org.openscience.cdk.protein.data

Modifier and Type	Class	Description
class	PDBAtom	Represents the idea of an atom as used in PDB files.