IReactionMechanism (cdk 2.9 API)

All Known Implementing Classes:

AdductionLPMechanism, AdductionPBMechanism, HeterolyticCleavageMechanism, HomolyticCleavageMechanism, RadicalSiteIonizationMechanism, RadicalSiteRearrangementMechanism, RearrangementChargeMechanism, RemovingSEofBMechanism, RemovingSEofNBMechanism, SharingElectronMechanism, TautomerizationMechanism
```
public interface IReactionMechanism
```
Classes that implement this interface are reaction mechanisms.

Author:

Miguel Rojas

Source code:
main

Belongs to CDK module:
reaction

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`IReaction`	`initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList)`	Initiates the process for the given mechanism.

- Method Detail
  - initiate
```
IReaction initiate(IAtomContainerSet atomContainerSet,
                   ArrayList<IAtom> atomList,
                   ArrayList<IBond> bondList)
            throws CDKException
```
    Initiates the process for the given mechanism. The atoms to apply are mapped between reactants and products.
    
    Parameters:
    
    atomContainerSet -
    
    atomList - The list of atoms taking part in the mechanism
    
    bondList - The list of bonds taking part in the mechanism
    
    Returns:
    
    The Reaction mechanism
    
    Throws:
    
    CDKException - if an error occurs during the reaction process. See documentation for individual reaction processes