Class RearrangementChargeMechanism
- java.lang.Object
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- org.openscience.cdk.reaction.mechanism.RearrangementChargeMechanism
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- All Implemented Interfaces:
IReactionMechanism
public class RearrangementChargeMechanism extends Object implements IReactionMechanism
This mechanism displaces the charge(radical, charge + or charge -) because of a double bond which is associated. It returns the reaction mechanism which has been cloned the
IAtomContainer
.This reaction could be represented as [A*]-Y=Z => A=Z-[Y*]
- Author:
- miguelrojasch
- Source code:
- main
- Belongs to CDK module:
- reaction
- Created on:
- 2008-02-10
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Constructor Summary
Constructors Constructor Description RearrangementChargeMechanism()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description IReaction
initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList)
Initiates the process for the given mechanism.
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Method Detail
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initiate
public IReaction initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList) throws CDKException
Initiates the process for the given mechanism. The atoms to apply are mapped between reactants and products.- Specified by:
initiate
in interfaceIReactionMechanism
- Parameters:
atomContainerSet
-atomList
- The list of atoms taking part in the mechanism. Only allowed two three. The first atom is the atom which must contain the charge to be moved, the second is the atom which is in the middle and the third is the atom which acquires the new chargebondList
- The list of bonds taking part in the mechanism. Only allowed two bond. The first bond is the bond to increase the order and the second is the bond to decrease the order It is the bond which is moved- Returns:
- The Reaction mechanism
- Throws:
CDKException
- if an error occurs during the reaction process. See documentation for individual reaction processes
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