AdductionLPMechanism (cdk 2.9 API)

java.lang.Object
- org.openscience.cdk.reaction.mechanism.AdductionLPMechanism

All Implemented Interfaces:

IReactionMechanism
```
public class AdductionLPMechanism
extends Object
implements IReactionMechanism
```
This mechanism adduct together two fragments. The second fragment will be deficient in charge. It returns the reaction mechanism which has been cloned the IAtomContainer.

This reaction could be represented as A + [B+] => A-B

Author:

miguelrojasch

Source code:
main

Belongs to CDK module:
reaction

Created on:

2008-02-10

Constructor Summary

Constructors
Constructor Description

AdductionLPMechanism()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`IReaction`	`initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList)`	Initiates the process for the given mechanism.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - AdductionLPMechanism
```
public AdductionLPMechanism()
```
- Method Detail
  - initiate
```
public IReaction initiate(IAtomContainerSet atomContainerSet,
                          ArrayList<IAtom> atomList,
                          ArrayList<IBond> bondList)
                   throws CDKException
```
    Initiates the process for the given mechanism. The atoms and bonds to apply are mapped between reactants and products.
    
    Specified by:
    
    initiate in interface IReactionMechanism
    
    Parameters:
    
    atomContainerSet -
    
    atomList - The list of atoms taking part in the mechanism. Only allowed two atoms.
    
    bondList - The list of bonds taking part in the mechanism. not allowed bonds.
    
    Returns:
    
    The Reaction mechanism
    
    Throws:
    
    CDKException - if an error occurs during the reaction process. See documentation for individual reaction processes