Uses of Interface
org.openscience.cdk.interfaces.IChemSequence
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Uses of IChemSequence in org.openscience.cdk
Classes in org.openscience.cdk that implement IChemSequence Modifier and Type Class Description class
ChemSequence
A sequence of ChemModels, which can, for example, be used to store the course of a reaction.Fields in org.openscience.cdk declared as IChemSequence Modifier and Type Field Description protected IChemSequence[]
ChemFile. chemSequences
Array of ChemSquences.Methods in org.openscience.cdk that return IChemSequence Modifier and Type Method Description IChemSequence
ChemFile. getChemSequence(int number)
Returns the ChemSequence at positionnumber
in the container.Methods in org.openscience.cdk that return types with arguments of type IChemSequence Modifier and Type Method Description Iterable<IChemSequence>
ChemFile. chemSequences()
Returns the Iterable to ChemSequences of this container.Methods in org.openscience.cdk with parameters of type IChemSequence Modifier and Type Method Description void
ChemFile. addChemSequence(IChemSequence chemSequence)
Adds a ChemSequence to this container. -
Uses of IChemSequence in org.openscience.cdk.debug
Classes in org.openscience.cdk.debug that implement IChemSequence Modifier and Type Class Description class
DebugChemSequence
Debugging data class.Methods in org.openscience.cdk.debug that return IChemSequence Modifier and Type Method Description IChemSequence
DebugChemFile. getChemSequence(int number)
Returns the ChemSequence at positionnumber
in the container.Methods in org.openscience.cdk.debug that return types with arguments of type IChemSequence Modifier and Type Method Description Iterable<IChemSequence>
DebugChemFile. chemSequences()
Returns the Iterable to ChemSequences of this container.Methods in org.openscience.cdk.debug with parameters of type IChemSequence Modifier and Type Method Description void
DebugChemFile. addChemSequence(IChemSequence chemSequence)
Adds a ChemSequence to this container. -
Uses of IChemSequence in org.openscience.cdk.interfaces
Methods in org.openscience.cdk.interfaces that return IChemSequence Modifier and Type Method Description IChemSequence
IChemFile. getChemSequence(int number)
Returns the ChemSequence at positionnumber
in the container.Methods in org.openscience.cdk.interfaces that return types with arguments of type IChemSequence Modifier and Type Method Description Iterable<IChemSequence>
IChemFile. chemSequences()
Returns theIterable
to ChemSequences of this container.Methods in org.openscience.cdk.interfaces with parameters of type IChemSequence Modifier and Type Method Description void
IChemFile. addChemSequence(IChemSequence chemSequence)
Adds anIChemSequence
to this container. -
Uses of IChemSequence in org.openscience.cdk.io.cml
Fields in org.openscience.cdk.io.cml declared as IChemSequence Modifier and Type Field Description protected IChemSequence
CMLCoreModule. currentChemSequence
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Uses of IChemSequence in org.openscience.cdk.libio.cml
Methods in org.openscience.cdk.libio.cml with parameters of type IChemSequence Modifier and Type Method Description org.xmlcml.cml.element.CMLList
Convertor. cdkChemSequenceToCMLList(IChemSequence sequence)
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Uses of IChemSequence in org.openscience.cdk.silent
Classes in org.openscience.cdk.silent that implement IChemSequence Modifier and Type Class Description class
ChemSequence
A sequence of ChemModels, which can, for example, be used to store the course of a reaction.Fields in org.openscience.cdk.silent declared as IChemSequence Modifier and Type Field Description protected IChemSequence[]
ChemFile. chemSequences
Array of ChemSquences.Methods in org.openscience.cdk.silent that return IChemSequence Modifier and Type Method Description IChemSequence
ChemFile. getChemSequence(int number)
Returns the ChemSequence at positionnumber
in the container.Methods in org.openscience.cdk.silent that return types with arguments of type IChemSequence Modifier and Type Method Description Iterable<IChemSequence>
ChemFile. chemSequences()
Returns the Iterable to ChemSequences of this container.Methods in org.openscience.cdk.silent with parameters of type IChemSequence Modifier and Type Method Description void
ChemFile. addChemSequence(IChemSequence chemSequence)
Adds a ChemSequence to this container. -
Uses of IChemSequence in org.openscience.cdk.tools.manipulator
Methods in org.openscience.cdk.tools.manipulator with parameters of type IChemSequence Modifier and Type Method Description static List<IAtomContainer>
ChemSequenceManipulator. getAllAtomContainers(IChemSequence sequence)
Returns all the AtomContainer's of a ChemSequence.static List<IChemObject>
ChemSequenceManipulator. getAllChemObjects(IChemSequence sequence)
Returns a List of all IChemObject inside a ChemSequence.static List<String>
ChemSequenceManipulator. getAllIDs(IChemSequence sequence)
static int
ChemSequenceManipulator. getAtomCount(IChemSequence sequence)
Get the total number of atoms inside an IChemSequence.static int
ChemSequenceManipulator. getBondCount(IChemSequence sequence)
Get the total number of bonds inside an IChemSequence. -
Uses of IChemSequence in org.openscience.cdk.validate
Methods in org.openscience.cdk.validate with parameters of type IChemSequence Modifier and Type Method Description ValidationReport
AbstractValidator. validateChemSequence(IChemSequence subject)
ValidationReport
CDKValidator. validateChemSequence(IChemSequence subject)
ValidationReport
IValidator. validateChemSequence(IChemSequence subject)
ValidationReport
ValidatorEngine. validateChemSequence(IChemSequence subject)
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