Package org.openscience.cdk.debug

Class DebugPDBStructure

java.lang.Object

org.openscience.cdk.ChemObject

org.openscience.cdk.protein.data.PDBStructure

org.openscience.cdk.debug.DebugPDBStructure

All Implemented Interfaces:

Serializable, Cloneable, ICDKObject, IChemObject, IPDBStructure

public class DebugPDBStructure
extends PDBStructure

Debugging data class.

Author:

Miguel Rojas

See Also:

Serialized Form

Source code:

main

Belongs to CDK module:

datadebug

Field Summary

Fields inherited from class org.openscience.cdk.protein.data.PDBStructure

HELIX, SHEET, TURN

Constructor Summary

Constructors

Constructor	Description
DebugPDBStructure()

Method Summary

Modifier and Type	Method	Description
Character	getEndChainID()	get the ending Chain identifier of this structure.
Character	getEndInsertionCode()	get the ending Code for insertion of residues of this structure.
Integer	getEndSequenceNumber()	get the ending sequence number of this structure.
Character	getStartChainID()	get start Chain identifier of this structure.
Character	getStartInsertionCode()	get start Code for insertion of residues of this structure.
Integer	getStartSequenceNumber()	get the start sequence number of this structure.
String	getStructureType()	get Structure Type of this structure.
void	setEndChainID(Character endChainID)	set the ending Chain identifier of this structure.
void	setEndInsertionCode(Character endInsertionCode)	set the ending Code for insertion of residues of this structure.
void	setEndSequenceNumber(Integer endSequenceNumber)	set the ending sequence number of this structure.
void	setStartChainID(Character startChainID)	set the start Chain identifier of this structure.
void	setStartInsertionCode(Character startInsertionCode)	set the start Chain identifier of this structure.
void	setStartSequenceNumber(Integer startSequenceNumber)	set the start sequence number of this structure.
void	setStructureType(String structureType)	set the Structure Type of this structure.

Methods inherited from class org.openscience.cdk.ChemObject

addListener, addProperties, clone, compare, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

toString

Constructor Detail

DebugPDBStructure

public DebugPDBStructure()

Method Detail

getEndChainID

public Character getEndChainID()

get the ending Chain identifier of this structure.

Specified by:

getEndChainID in interface IPDBStructure

Overrides:

getEndChainID in class PDBStructure

Returns:

the ending Chain identifier of this structure

setEndChainID

public void setEndChainID(Character endChainID)

set the ending Chain identifier of this structure.

Specified by:

setEndChainID in interface IPDBStructure

Overrides:

setEndChainID in class PDBStructure

Parameters:

endChainID - the ending Chain identifier of this structure

getEndInsertionCode

public Character getEndInsertionCode()

get the ending Code for insertion of residues of this structure.

Specified by:

getEndInsertionCode in interface IPDBStructure

Overrides:

getEndInsertionCode in class PDBStructure

Returns:

the ending Code for insertion of residues of this structure

setEndInsertionCode

public void setEndInsertionCode(Character endInsertionCode)

set the ending Code for insertion of residues of this structure.

Specified by:

setEndInsertionCode in interface IPDBStructure

Overrides:

setEndInsertionCode in class PDBStructure

Parameters:

endInsertionCode - the ending Code for insertion of residues of this structure

getEndSequenceNumber

public Integer getEndSequenceNumber()

get the ending sequence number of this structure.

Specified by:

getEndSequenceNumber in interface IPDBStructure

Overrides:

getEndSequenceNumber in class PDBStructure

Returns:

the ending sequence number of this structure

setEndSequenceNumber

public void setEndSequenceNumber(Integer endSequenceNumber)

set the ending sequence number of this structure.

Specified by:

setEndSequenceNumber in interface IPDBStructure

Overrides:

setEndSequenceNumber in class PDBStructure

Parameters:

endSequenceNumber - the ending sequence number of this structure

getStartChainID

public Character getStartChainID()

get start Chain identifier of this structure.

Specified by:

getStartChainID in interface IPDBStructure

Overrides:

getStartChainID in class PDBStructure

Returns:

the start Chain identifier of this structure

setStartChainID

public void setStartChainID(Character startChainID)

set the start Chain identifier of this structure.

Specified by:

setStartChainID in interface IPDBStructure

Overrides:

setStartChainID in class PDBStructure

Parameters:

startChainID - the start Chain identifier of this structure

getStartInsertionCode

public Character getStartInsertionCode()

get start Code for insertion of residues of this structure.

Specified by:

getStartInsertionCode in interface IPDBStructure

Overrides:

getStartInsertionCode in class PDBStructure

Returns:

the start Code for insertion of residues of this structure

setStartInsertionCode

public void setStartInsertionCode(Character startInsertionCode)

set the start Chain identifier of this structure.

Specified by:

setStartInsertionCode in interface IPDBStructure

Overrides:

setStartInsertionCode in class PDBStructure

Parameters:

startInsertionCode - the start Chain identifier of this structure

getStartSequenceNumber

public Integer getStartSequenceNumber()

get the start sequence number of this structure.

Specified by:

getStartSequenceNumber in interface IPDBStructure

Overrides:

getStartSequenceNumber in class PDBStructure

Returns:

the start sequence number of this structure

setStartSequenceNumber

public void setStartSequenceNumber(Integer startSequenceNumber)

set the start sequence number of this structure.

Specified by:

setStartSequenceNumber in interface IPDBStructure

Overrides:

setStartSequenceNumber in class PDBStructure

Parameters:

startSequenceNumber - the start sequence number of this structure

getStructureType

public String getStructureType()

get Structure Type of this structure.

Specified by:

getStructureType in interface IPDBStructure

Overrides:

getStructureType in class PDBStructure

Returns:

the Structure Type of this structure

setStructureType

public void setStructureType(String structureType)

set the Structure Type of this structure.

Specified by:

setStructureType in interface IPDBStructure

Overrides:

setStructureType in class PDBStructure

Parameters:

structureType - the Structure Type of this structure