public class RearrangementChargeMechanism extends Object implements IReactionMechanism
This mechanism displaces the charge(radical, charge + or charge -) because of
a double bond which is associated.
It returns the reaction mechanism which has been cloned the
This reaction could be represented as [A*]-Y=Z => A=Z-[Y*]
|Constructor and Description|
|Modifier and Type||Method and Description|
Initiates the process for the given mechanism.
public IReaction initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList) throws CDKException
atomList- The list of atoms taking part in the mechanism. Only allowed two three. The first atom is the atom which must contain the charge to be moved, the second is the atom which is in the middle and the third is the atom which acquires the new charge
bondList- The list of bonds taking part in the mechanism. Only allowed two bond. The first bond is the bond to increase the order and the second is the bond to decrease the order It is the bond which is moved
CDKException- if an error occurs during the reaction process. See documentation for individual reaction processes
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