public class RadicalSiteIonizationMechanism extends Object implements IReactionMechanism
This mechanism extracts an atom because of the stabilization of a radical. It returns the reaction mechanism which has been cloned the IAtomContainer.
This reaction could be represented as Y-B-[C*] => [Y*] + B=C
|Constructor and Description|
|Modifier and Type||Method and Description|
Initiates the process for the given mechanism.
public IReaction initiate(IAtomContainerSet atomContainerSet, ArrayList<IAtom> atomList, ArrayList<IBond> bondList) throws CDKException
atomList- The list of atoms taking part in the mechanism. Only allowed two atoms. The first atom is the atom which contains the ISingleElectron and the second third is the atom which will be removed the first atom
bondList- The list of bonds taking part in the mechanism. Only allowed one bond. It is the bond which is moved
CDKException- if an error occurs during the reaction process. See documentation for individual reaction processes
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