org.openscience.cdk.interfaces

Interface IPDBStructure

All Superinterfaces:

Cloneable, ICDKObject

All Known Implementing Classes:

DebugPDBStructure, PDBStructure, PDBStructure

public interface IPDBStructure
extends ICDKObject

Represents the idea of an chemical structure.

Author:

Miguel Rojas <miguel.rojas@uni-koeln.de>

Source code:

master

Belongs to CDK module:

interfaces

Keywords:

pdbpolymer

Created on:

2006-11-20

Method Summary

Modifier and Type	Method and Description
Character	getEndChainID() get the ending Chain identifier of this structure.
Character	getEndInsertionCode() get the ending Code for insertion of residues of this structure.
Integer	getEndSequenceNumber() get the ending sequence number of this structure.
Character	getStartChainID() get start Chain identifier of this structure.
Character	getStartInsertionCode() get start Code for insertion of residues of this structure.
Integer	getStartSequenceNumber() get the start sequence number of this structure.
String	getStructureType() get Structure Type of this structure.
void	setEndChainID(Character endChainID) set the ending Chain identifier of this structure.
void	setEndInsertionCode(Character endInsertionCode) set the ending Code for insertion of residues of this structure.
void	setEndSequenceNumber(Integer endSequenceNumber) set the ending sequence number of this structure.
void	setStartChainID(Character startChainID) set the start Chain identifier of this structure.
void	setStartInsertionCode(Character startInsertionCode) set the start Chain identifier of this structure.
void	setStartSequenceNumber(Integer startSequenceNumber) set the start sequence number of this structure.
void	setStructureType(String structureType) set the Structure Type of this structure.

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Method Detail

getEndChainID

Character getEndChainID()

get the ending Chain identifier of this structure.

Returns:

the ending Chain identifier of this structure

setEndChainID

void setEndChainID(Character endChainID)

set the ending Chain identifier of this structure.

Parameters:

endChainID - the ending Chain identifier of this structure

getEndInsertionCode

Character getEndInsertionCode()

get the ending Code for insertion of residues of this structure.

Returns:

the ending Code for insertion of residues of this structure

setEndInsertionCode

void setEndInsertionCode(Character endInsertionCode)

set the ending Code for insertion of residues of this structure.

Parameters:

endInsertionCode - the ending Code for insertion of residues of this structure

getEndSequenceNumber

Integer getEndSequenceNumber()

get the ending sequence number of this structure.

Returns:

the ending sequence number of this structure

setEndSequenceNumber

void setEndSequenceNumber(Integer endSequenceNumber)

set the ending sequence number of this structure.

Parameters:

endSequenceNumber - the ending sequence number of this structure

getStartChainID

Character getStartChainID()

get start Chain identifier of this structure.

Returns:

the start Chain identifier of this structure

setStartChainID

void setStartChainID(Character startChainID)

set the start Chain identifier of this structure.

Parameters:

startChainID - the start Chain identifier of this structure

getStartInsertionCode

Character getStartInsertionCode()

get start Code for insertion of residues of this structure.

Returns:

the start Code for insertion of residues of this structure

setStartInsertionCode

void setStartInsertionCode(Character startInsertionCode)

set the start Chain identifier of this structure.

Parameters:

startInsertionCode - the start Chain identifier of this structure

getStartSequenceNumber

Integer getStartSequenceNumber()

get the start sequence number of this structure.

Returns:

the start sequence number of this structure

setStartSequenceNumber

void setStartSequenceNumber(Integer startSequenceNumber)

set the start sequence number of this structure.

Parameters:

startSequenceNumber - the start sequence number of this structure

getStructureType

String getStructureType()

get Structure Type of this structure.

Returns:

the Structure Type of this structure

setStructureType

void setStructureType(String structureType)

set the Structure Type of this structure.

Parameters:

structureType - the Structure Type of this structure