Uses of Interface
org.openscience.cdk.graph.CycleFinder

Packages that use CycleFinder

Package	Description
org.openscience.cdk.aromaticity
org.openscience.cdk.graph

Uses of CycleFinder in org.openscience.cdk.aromaticity

Constructors in org.openscience.cdk.aromaticity with parameters of type CycleFinder

Constructor and Description
Aromaticity(ElectronDonation model, CycleFinder cycles) Create an aromaticity model using the specified electron donation model which is tested on the cycles.

Uses of CycleFinder in org.openscience.cdk.graph

Methods in org.openscience.cdk.graph that return CycleFinder

Modifier and Type	Method and Description
static CycleFinder	Cycles.all() Create a cycle finder which will compute all simple cycles in a molecule.
static CycleFinder	Cycles.all(int length) All cycles of smaller than or equal to the specified length.
static CycleFinder	Cycles.allOrVertexShort() Deprecated. use Cycles.or(org.openscience.cdk.graph.CycleFinder, org.openscience.cdk.graph.CycleFinder) to define a custom fall-back
static CycleFinder	Cycles.cdkAromaticSet() Create a cycle finder which will compute a set of cycles traditionally used by the CDK to test for aromaticity.
static CycleFinder	Cycles.edgeShort() Create a cycle finder which will compute the shortest cycles of each vertex in a molecule.
static CycleFinder	Cycles.essential() Create a cycle finder which will compute the essential cycles of a molecule.
static CycleFinder	Cycles.mcb() Create a cycle finder which will compute the minimum cycle basis (MCB) of a molecule.
static CycleFinder	Cycles.or(CycleFinder primary, CycleFinder auxiliary) Use an auxiliary cycle finder if the primary method was intractable.
static CycleFinder	Cycles.relevant() Create a cycle finder which will compute the relevant cycle basis (RC) of a molecule.
static CycleFinder	Cycles.tripletShort() Create a cycle finder which will compute the triplet short cycles of a molecule.
static CycleFinder	Cycles.unchorded(CycleFinder original) Derive a new cycle finder that only provides cycles without a chord.
static CycleFinder	Cycles.vertexShort() Create a cycle finder which will compute the shortest cycles of each vertex in a molecule.

Methods in org.openscience.cdk.graph with parameters of type CycleFinder

Modifier and Type	Method and Description
static CycleFinder	Cycles.or(CycleFinder primary, CycleFinder auxiliary) Use an auxiliary cycle finder if the primary method was intractable.
static CycleFinder	Cycles.unchorded(CycleFinder original) Derive a new cycle finder that only provides cycles without a chord.