org.openscience.cdk.isomorphism.matchers.smarts

Class LogicalOperatorBond

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.smarts.SMARTSBond

org.openscience.cdk.isomorphism.matchers.smarts.LogicalOperatorBond

All Implemented Interfaces:

Cloneable, IBond, ICDKObject, IChemObject, IElectronContainer, IQueryBond

Deprecated.

@Deprecated
public class LogicalOperatorBond
extends SMARTSBond

This class matches a logical operator that connects two query bonds.

Source code:

master

Belongs to CDK module:

smarts

Keywords:

SMARTS

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

IBond.Display, IBond.Order, IBond.Stereo

Field Summary

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Constructor Summary

Constructors

Constructor and Description
LogicalOperatorBond(IChemObjectBuilder builder) Deprecated.

Method Summary

Modifier and Type	Method and Description
IQueryBond	getLeft() Deprecated.
String	getOperator() Deprecated.
IQueryBond	getRight() Deprecated.
boolean	matches(IBond bond) Deprecated. Returns true of the given bond matches this IQueryBond.
void	setAtoms(IAtom[] atoms) Deprecated. Sets the array of atoms making up this query bond.
void	setLeft(IQueryBond left) Deprecated.
void	setOperator(String name) Deprecated.
void	setRight(IQueryBond right) Deprecated.

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, equals, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getElectronCount, getEnd, getExpression, getIndex, getOrder, getOther, getStereo, hashCode, isAromatic, isConnectedTo, isInRing, setAtom, setDisplay, setElectronCount, setExpression, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, matches, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getBegin, getConnectedAtom, getConnectedAtoms, getContainer, getDisplay, getEnd, getIndex, getOrder, getOther, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setDisplay, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Constructor Detail

LogicalOperatorBond

public LogicalOperatorBond(IChemObjectBuilder builder)

Deprecated.

Method Detail

getLeft

public IQueryBond getLeft()

Deprecated.

getOperator

public String getOperator()

Deprecated.

getRight

public IQueryBond getRight()

Deprecated.

setLeft

public void setLeft(IQueryBond left)

Deprecated.

setOperator

public void setOperator(String name)

Deprecated.

setRight

public void setRight(IQueryBond right)

Deprecated.

matches

public boolean matches(IBond bond)

Deprecated.

Description copied from class: QueryBond

Returns true of the given bond matches this IQueryBond.

Specified by:

matches in interface IQueryBond

Overrides:

matches in class SMARTSBond

Parameters:

bond - IBond to match against

Returns:

true, if this IQueryBond matches the given IBond

setAtoms

public void setAtoms(IAtom[] atoms)

Deprecated.

Description copied from class: QueryBond

Sets the array of atoms making up this query bond.

Specified by:

setAtoms in interface IBond

Overrides:

setAtoms in class QueryBond

Parameters:

atoms - An array of atoms that forms this query bond

See Also:

QueryBond.atoms