@Deprecated public class DefaultMCSPlusAtomMatcher extends Object implements AtomMatcher
Constructor and Description |
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DefaultMCSPlusAtomMatcher()
Deprecated.
Constructor
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DefaultMCSPlusAtomMatcher(IAtomContainer queryContainer,
IAtom atom,
boolean shouldMatchBonds)
Deprecated.
Constructor
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DefaultMCSPlusAtomMatcher(IAtomContainer queryContainer,
IAtom template,
int blockedPositions,
boolean shouldMatchBonds)
Deprecated.
Constructor
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DefaultMCSPlusAtomMatcher(IQueryAtom smartQueryAtom,
IQueryAtomContainer container)
Deprecated.
Constructor
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Modifier and Type | Method and Description |
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boolean |
isBondMatchFlag()
Deprecated.
|
boolean |
matches(IAtomContainer targetContainer,
IAtom targetAtom)
Deprecated.
|
void |
setBondMatchFlag(boolean shouldMatchBonds)
Deprecated.
|
void |
setMaximumNeighbors(int maximum)
Deprecated.
|
void |
setSymbol(String symbol)
Deprecated.
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public DefaultMCSPlusAtomMatcher()
public DefaultMCSPlusAtomMatcher(IAtomContainer queryContainer, IAtom atom, boolean shouldMatchBonds)
queryContainer
- query atom containeratom
- query atomshouldMatchBonds
- bond matching flagpublic DefaultMCSPlusAtomMatcher(IQueryAtom smartQueryAtom, IQueryAtomContainer container)
smartQueryAtom
- query atomcontainer
- public DefaultMCSPlusAtomMatcher(IAtomContainer queryContainer, IAtom template, int blockedPositions, boolean shouldMatchBonds)
queryContainer
- query atom containertemplate
- query atomblockedPositions
- shouldMatchBonds
- bond matching flagpublic boolean isBondMatchFlag()
public final void setBondMatchFlag(boolean shouldMatchBonds)
shouldMatchBonds
- the shouldMatchBonds to setpublic void setMaximumNeighbors(int maximum)
maximum
- numbers of connected atoms allowedpublic void setSymbol(String symbol)
symbol
- public boolean matches(IAtomContainer targetContainer, IAtom targetAtom)
matches
in interface AtomMatcher
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