Uses of Class
org.openscience.cdk.pharmacophore.PharmacophoreQuery

Packages that use PharmacophoreQuery

Package	Description
org.openscience.cdk.pharmacophore

Uses of PharmacophoreQuery in org.openscience.cdk.pharmacophore

Methods in org.openscience.cdk.pharmacophore that return PharmacophoreQuery

Modifier and Type	Method and Description
PharmacophoreQuery	PharmacophoreMatcher.getPharmacophoreQuery() Get the query pharmacophore.

Methods in org.openscience.cdk.pharmacophore that return types with arguments of type PharmacophoreQuery

Modifier and Type	Method and Description
static List<PharmacophoreQuery>	PharmacophoreUtils.readPharmacophoreDefinitions(InputStream ins) Read in a set of pharmacophore definitions to create pharmacophore queries.
static List<PharmacophoreQuery>	PharmacophoreUtils.readPharmacophoreDefinitions(String filename) Read in a set of pharmacophore definitions to create pharmacophore queries.

Methods in org.openscience.cdk.pharmacophore with parameters of type PharmacophoreQuery

Modifier and Type	Method and Description
void	PharmacophoreMatcher.setPharmacophoreQuery(PharmacophoreQuery query) Set a pharmacophore query.
static void	PharmacophoreUtils.writePharmacophoreDefinition(PharmacophoreQuery[] queries, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.
static void	PharmacophoreUtils.writePharmacophoreDefinition(PharmacophoreQuery query, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.

Method parameters in org.openscience.cdk.pharmacophore with type arguments of type PharmacophoreQuery

Modifier and Type	Method and Description
static void	PharmacophoreUtils.writePharmacophoreDefinition(List<PharmacophoreQuery> queries, OutputStream out) Write out one or more pharmacophore queries in the CDK XML format.

Constructors in org.openscience.cdk.pharmacophore with parameters of type PharmacophoreQuery

Constructor and Description
PharmacophoreMatcher(PharmacophoreQuery pharmacophoreQuery) Initialize the matcher with a query.