Package | Description |
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org.openscience.cdk.depict |
Modifier and Type | Method and Description |
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DepictionGenerator |
DepictionGenerator.withAnnotationColor(Color color)
Set the color annotations (e.g.
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DepictionGenerator |
DepictionGenerator.withAnnotationScale(double scale)
Set the size of annotations relative to atom symbols.
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DepictionGenerator |
DepictionGenerator.withAromaticDisplay()
When aromaticity is set on bonds, display this in the diagram.
|
DepictionGenerator |
DepictionGenerator.withAtomColors()
Color atom symbols using typical colors, oxygens are red, nitrogens are
blue, etc.
|
DepictionGenerator |
DepictionGenerator.withAtomColors(IAtomColorer colorer)
Color atom symbols using provided colorer.
|
DepictionGenerator |
DepictionGenerator.withAtomMapHighlight()
Adds to the highlight the coloring of reaction atom-maps.
|
DepictionGenerator |
DepictionGenerator.withAtomMapHighlight(Color[] colors)
Adds to the highlight the coloring of reaction atom-maps.
|
DepictionGenerator |
DepictionGenerator.withAtomMapNumbers()
Display atom-atom mapping numbers on a reaction.
|
DepictionGenerator |
DepictionGenerator.withAtomNumbers()
Display atom numbers on the molecule or reaction.
|
DepictionGenerator |
DepictionGenerator.withAtomValues()
Display atom values on the molecule or reaction.
|
DepictionGenerator |
DepictionGenerator.withBackgroundColor(Color color)
Change the background color.
|
DepictionGenerator |
DepictionGenerator.withCarbonSymbols()
Display atom symbols for all atoms in the molecule.
|
DepictionGenerator |
DepictionGenerator.withDeuteriumSymbol(boolean v)
Indicate whether 2H should be rendered as 'D'.
|
DepictionGenerator |
DepictionGenerator.withFillToFit()
Resize depictions to fill all available space (only if a size is specified).
|
DepictionGenerator |
DepictionGenerator.withHighlight(Iterable<? extends IChemObject> chemObjs,
Color color)
Highlight the provided set of atoms and bonds in the depiction in the
specified color.
|
DepictionGenerator |
DepictionGenerator.withMappedRxnAlign(boolean val)
Specifies that reactions with atom-atom mappings should have their reactants/product
coordinates aligned.
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DepictionGenerator |
DepictionGenerator.withMargin(double m)
Specify a desired size of margin.
|
DepictionGenerator |
DepictionGenerator.withMolTitle()
Display a molecule title with each depiction.
|
DepictionGenerator |
DepictionGenerator.withOuterGlowHighlight()
Highlights are shown as an outer glow around the atom symbols and bonds
rather than recoloring.
|
DepictionGenerator |
DepictionGenerator.withOuterGlowHighlight(double width)
Highlights are shown as an outer glow around the atom symbols and bonds
rather than recoloring.
|
DepictionGenerator |
DepictionGenerator.withPadding(double p)
Specify a desired size of padding for molecule sets and reactions.
|
<T extends IGeneratorParameter<S>,S,U extends S> |
DepictionGenerator.withParam(Class<T> key,
U value)
Low-level option method to set a rendering model parameter.
|
DepictionGenerator |
DepictionGenerator.withRxnTitle()
Display a reaction title with the depiction.
|
DepictionGenerator |
DepictionGenerator.withSize(double w,
double h)
Specify a desired size of depiction.
|
DepictionGenerator |
DepictionGenerator.withTerminalCarbons()
Display atom symbols for terminal carbons (i.e.
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DepictionGenerator |
DepictionGenerator.withTitleColor(Color color)
Set the color titles will appear in.
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DepictionGenerator |
DepictionGenerator.withTitleScale(double scale)
Set the size of titles compared to atom symbols.
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DepictionGenerator |
DepictionGenerator.withZoom(double zoom)
Specify a desired zoom factor - this changes the base size of a
depiction and is used for uniformly making depictions bigger.
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