org.openscience.cdk.renderer.color

Class PartialAtomicChargeColors

java.lang.Object

org.openscience.cdk.renderer.color.PartialAtomicChargeColors

All Implemented Interfaces:

IAtomColorer

public class PartialAtomicChargeColors
extends Object
implements IAtomColorer

Class defining the color which with atoms are colored.

This scheme used the atomic partial charge to determine the Atom's color: uncharged atoms are colored white, positively charged atoms are blue, and negatively charge atoms are red.

Source code:

master

Belongs to CDK module:

render

Keywords:

atom coloring, partial charges

Constructor Summary

Constructors

Constructor and Description
PartialAtomicChargeColors()

Method Summary

Methods

Modifier and Type	Method and Description
Color	getAtomColor(IAtom atom) Returns the a color reflecting the given atom's partial charge.
Color	getAtomColor(IAtom atom, Color defaultColor) Returns the a color reflecting the given atom's partial charge, or defaults to the given color if no color is defined.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PartialAtomicChargeColors

public PartialAtomicChargeColors()

Method Detail

getAtomColor

public Color getAtomColor(IAtom atom)

Returns the a color reflecting the given atom's partial charge.

Specified by:

getAtomColor in interface IAtomColorer

Parameters:

atom - IAtom to get a color for

Returns:

the color for the given atom.

getAtomColor

public Color getAtomColor(IAtom atom,
                 Color defaultColor)

Returns the a color reflecting the given atom's partial charge, or defaults to the given color if no color is defined.

Specified by:

getAtomColor in interface IAtomColorer

Parameters:

atom - IAtom to get a color for

defaultColor - Color returned if this scheme does not define a color for the passed IAtom

Returns:

the color for the given atom.