Uses of Class
org.openscience.cdk.isomorphism.matchers.QueryAtomContainer

Packages that use QueryAtomContainer

Package	Description
org.openscience.cdk.isomorphism.matchers
org.openscience.cdk.pharmacophore
org.openscience.cdk.smiles.smarts.parser

Uses of QueryAtomContainer in org.openscience.cdk.isomorphism.matchers

Methods in org.openscience.cdk.isomorphism.matchers that return QueryAtomContainer

Modifier and Type	Method and Description
static QueryAtomContainer	QueryAtomContainerCreator.createAnyAtomAnyBondContainer(IAtomContainer container, boolean aromaticity) Creates a QueryAtomContainer with wildcard atoms and wildcard bonds.
static QueryAtomContainer	QueryAtomContainerCreator.createAnyAtomContainer(IAtomContainer container, boolean aromaticity) Creates a QueryAtomContainer with AnyAtoms / Aromatic Atoms and OrderQueryBonds / AromaticQueryBonds.
static QueryAtomContainer	QueryAtomContainerCreator.createAnyAtomForPseudoAtomQueryContainer(IAtomContainer container) Creates a QueryAtomContainer with SymbolQueryAtom's and OrderQueryBond's.
static QueryAtomContainer	QueryAtomContainerCreator.createBasicQueryContainer(IAtomContainer container) Creates a QueryAtomContainer with SymbolQueryAtom's, AromaticQueryBond's and OrderQueryBond's.
static QueryAtomContainer	QueryAtomContainerCreator.createSymbolAndBondOrderQueryContainer(IAtomContainer container) Creates a QueryAtomContainer with SymbolQueryAtom's and OrderQueryBond's.
static QueryAtomContainer	QueryAtomContainerCreator.createSymbolAndChargeQueryContainer(IAtomContainer container) Creates a QueryAtomContainer with SymbolAncChargeQueryAtom's and OrderQueryBond's.
static QueryAtomContainer	QueryAtomContainerCreator.createSymbolChargeIDQueryContainer(IAtomContainer container)

Uses of QueryAtomContainer in org.openscience.cdk.pharmacophore

Subclasses of QueryAtomContainer in org.openscience.cdk.pharmacophore

Modifier and Type	Class and Description
class	PharmacophoreQuery Represents a colleciton of pharmacophore groups and constraints.

Uses of QueryAtomContainer in org.openscience.cdk.smiles.smarts.parser

Methods in org.openscience.cdk.smiles.smarts.parser that return QueryAtomContainer

Modifier and Type	Method and Description
static QueryAtomContainer	SMARTSParser.parse(String smarts, IChemObjectBuilder builder) This method parses a Smarts String and returns an instance of QueryAtomContainer