Package | Description |
---|---|
org.openscience.cdk.graph |
Modifier and Type | Method and Description |
---|---|
static Cycles |
Cycles.all(IAtomContainer container)
Find all simple cycles in a molecule.
|
static Cycles |
Cycles.all(IAtomContainer container,
int length)
All cycles of smaller than or equal to the specified length.
|
static Cycles |
Cycles.edgeShort(IAtomContainer container)
Find the edge short cycles of a molecule.
|
static Cycles |
Cycles.essential(IAtomContainer container)
Find the essential cycles of a molecule.
|
Cycles |
CycleFinder.find(IAtomContainer molecule)
Find the cycles of the provided molecule.
|
Cycles |
CycleFinder.find(IAtomContainer molecule,
int length)
Find the cycles of the provided molecule.
|
Cycles |
CycleFinder.find(IAtomContainer molecule,
int[][] graph,
int length)
Find the cycles of the provided molecule when an adjacent relation
(graph) is already available.
|
static Cycles |
Cycles.mcb(IAtomContainer container)
Find the minimum cycle basis (MCB) of a molecule.
|
static Cycles |
Cycles.relevant(IAtomContainer container)
Find the relevant cycles of a molecule.
|
static Cycles |
Cycles.sssr(IAtomContainer container)
Find the smallest set of smallest rings (SSSR) - aka minimum cycle basis
(MCB) of a molecule.
|
static Cycles |
Cycles.tripletShort(IAtomContainer container)
Find the triplet short cycles of a molecule.
|
static Cycles |
Cycles.vertexShort(IAtomContainer container)
Find the vertex short cycles of a molecule.
|
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