Uses of Interface
org.openscience.cdk.fingerprint.ICountFingerprint

Packages that use ICountFingerprint

Package	Description
org.openscience.cdk.fingerprint
org.openscience.cdk.similarity

Uses of ICountFingerprint in org.openscience.cdk.fingerprint

Classes in org.openscience.cdk.fingerprint that implement ICountFingerprint

Modifier and Type	Class and Description
class	IntArrayCountFingerprint

Methods in org.openscience.cdk.fingerprint that return ICountFingerprint

Modifier and Type	Method and Description
ICountFingerprint	SubstructureFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
ICountFingerprint	ShortestPathFingerprinter.getCountFingerprint(IAtomContainer iac)
ICountFingerprint	PubchemFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
ICountFingerprint	MACCSFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
ICountFingerprint	ExtendedFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
ICountFingerprint	EStateFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
ICountFingerprint	CircularFingerprinter.getCountFingerprint(IAtomContainer mol) Calculates the circular fingerprint for the given IAtomContainer, and returns a datastructure that enumerates all of the fingerprints, and their counts (i.e.
ICountFingerprint	SignatureFingerprinter.getCountFingerprint(IAtomContainer container)
ICountFingerprint	Fingerprinter.getCountFingerprint(IAtomContainer container)
ICountFingerprint	LingoFingerprinter.getCountFingerprint(IAtomContainer container)
ICountFingerprint	IFingerprinter.getCountFingerprint(IAtomContainer container) Returns the count fingerprint for the given IAtomContainer.
static ICountFingerprint	FingerprinterTool.makeCountFingerprint(Map<String,Integer> features) Wrap a mapping of features and their counts to a continuous (count based) fingerprint.

Methods in org.openscience.cdk.fingerprint with parameters of type ICountFingerprint

Modifier and Type	Method and Description
void	IntArrayCountFingerprint.merge(ICountFingerprint fp)
void	ICountFingerprint.merge(ICountFingerprint fp) Merge all from fp into the current fingerprint.

Uses of ICountFingerprint in org.openscience.cdk.similarity

Methods in org.openscience.cdk.similarity with parameters of type ICountFingerprint

Modifier and Type	Method and Description
static double	Tanimoto.calculate(ICountFingerprint fp1, ICountFingerprint fp2) Evaluate continuous Tanimoto coefficient for two feature,count fingerprint representations.
static double	Tanimoto.method1(ICountFingerprint fp1, ICountFingerprint fp2) Calculates Tanimoto distance for two count fingerprints using method 1.
static double	Tanimoto.method2(ICountFingerprint fp1, ICountFingerprint fp2) Calculates Tanimoto distance for two count fingerprints using method 2 [J.A. Grant, J.A. Haigh, B.T. Pickup, A. Nicholls and R.A. Sayle, Lingos, Finite State Machines, and Fast Similarity Searching, J. Chem. Inf. Model., 2006, 46:1912-1918, doi:10.1021/ci6002152].