Uses of Class
org.openscience.cdk.exception.InvalidSmilesException

Packages that use InvalidSmilesException

Package	Description
org.openscience.cdk.depict
org.openscience.cdk.normalize
org.openscience.cdk.smiles

Uses of InvalidSmilesException in org.openscience.cdk.depict

Methods in org.openscience.cdk.depict that throw InvalidSmilesException

Modifier and Type	Method and Description
boolean	Abbreviations.add(String line) Convenience method to add an abbreviation from a SMILES string.

Uses of InvalidSmilesException in org.openscience.cdk.normalize

Methods in org.openscience.cdk.normalize that throw InvalidSmilesException

Modifier and Type	Method and Description
static boolean	Normalizer.normalize(IAtomContainer ac, Document doc) Deprecated. The method takes an XML files like the following: <replace-set> <replace>O=N=O</replace> <replacement>[O-][N+]=O</replacement> </replace-set> All parts in ac which are the same as replace will be changed according to replacement.

Uses of InvalidSmilesException in org.openscience.cdk.smiles

Methods in org.openscience.cdk.smiles that throw InvalidSmilesException

Modifier and Type	Method and Description
IReaction	SmilesParser.parseReactionSmiles(String smiles) Parse a reaction SMILES.
IAtomContainer	SmilesParser.parseSmiles(String smiles) Parses a SMILES string and returns a structure (IAtomContainer).