Package org.openscience.cdk.tools.manipulator

Class AminoAcidManipulator

java.lang.Object

org.openscience.cdk.tools.manipulator.AminoAcidManipulator

public class AminoAcidManipulator
extends Object

Class with convenience methods that provide methods to manipulate AminoAcid's.

Author:

Egon Willighagen

Created on:

2005-08-19

Constructor Summary

Constructors

Constructor	Description
AminoAcidManipulator()

Method Summary

Modifier and Type	Method	Description
static void	addAcidicOxygen(IAminoAcid acid)	Adds the singly bonded oxygen from the acid group of the AminoAcid.
static void	removeAcidicOxygen(IAminoAcid acid)	Removes the singly bonded oxygen from the acid group of the AminoAcid.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AminoAcidManipulator

public AminoAcidManipulator()

Method Details

removeAcidicOxygen

public static void removeAcidicOxygen(IAminoAcid acid)
                               throws CDKException

Removes the singly bonded oxygen from the acid group of the AminoAcid.

Parameters:

acid - AminoAcid from which to remove the oxygen

Throws:

CDKException - when the C-terminus is not defined for the given AminoAcid

addAcidicOxygen

public static void addAcidicOxygen(IAminoAcid acid)
                            throws CDKException

Adds the singly bonded oxygen from the acid group of the AminoAcid.

Parameters:

acid - AminoAcid to which to add the oxygen

Throws:

CDKException - when the C-terminus is not defined for the given AminoAcid