Class AminoAcidManipulator

java.lang.Object
org.openscience.cdk.tools.manipulator.AminoAcidManipulator

public class AminoAcidManipulator extends Object
Class with convenience methods that provide methods to manipulate AminoAcid's.
Author:
Egon Willighagen
Source code:
main
Belongs to CDK module:
standard
Created on:
2005-08-19
  • Constructor Details

    • AminoAcidManipulator

      public AminoAcidManipulator()
  • Method Details

    • removeAcidicOxygen

      public static void removeAcidicOxygen(IAminoAcid acid) throws CDKException
      Removes the singly bonded oxygen from the acid group of the AminoAcid.
      Parameters:
      acid - AminoAcid from which to remove the oxygen
      Throws:
      CDKException - when the C-terminus is not defined for the given AminoAcid
    • addAcidicOxygen

      public static void addAcidicOxygen(IAminoAcid acid) throws CDKException
      Adds the singly bonded oxygen from the acid group of the AminoAcid.
      Parameters:
      acid - AminoAcid to which to add the oxygen
      Throws:
      CDKException - when the C-terminus is not defined for the given AminoAcid