Interface IState
- All Known Implementing Classes:
VFState
Deprecated.
SMSD has been deprecated from the CDK with a newer, more recent
version of SMSD is available at http://github.com/asad/smsd.
Interface for the storing the states of the mapping in the VF algorithm.
- Author:
- Syed Asad Rahman <asad@ebi.ac.uk>
- Source code:
- main
- Belongs to CDK module:
- smsd
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Method Summary
Modifier and TypeMethodDescriptionvoid
Deprecated.Returns this IState's atom map to its original condition.getMap()
Deprecated.Returns the current mapping of query atoms onto target atoms.boolean
Deprecated.Returns true if another candidate match can be found or false otherwise.boolean
isDead()
Deprecated.Returns true if no match will come from this IState.boolean
isGoal()
Deprecated.Returns true if all atoms in the query molecule have been mapped.boolean
isMatchFeasible
(Match match) Deprecated.Returns true if the given match will work with the current map, or false otherwise.Deprecated.Returns the next candidate match.Deprecated.Returns a state in which the atoms in match have been added to the current mapping.
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Method Details
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getMap
Deprecated.Returns the current mapping of query atoms onto target atoms. This map is shared among all states obtained through nextState.- Returns:
- the current mapping of query atoms onto target atoms
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hasNextCandidate
boolean hasNextCandidate()Deprecated.Returns true if another candidate match can be found or false otherwise.- Returns:
- true if another candidate mapping can be found or false otherwise.
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nextCandidate
Match nextCandidate()Deprecated.Returns the next candidate match.- Returns:
- the next candidate match.
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isMatchFeasible
Deprecated.Returns true if the given match will work with the current map, or false otherwise.- Parameters:
match
- the match to consider- Returns:
- true if the given match will work with the current map, or false otherwise.
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isGoal
boolean isGoal()Deprecated.Returns true if all atoms in the query molecule have been mapped.- Returns:
- true if all atoms in the query molecule have been mapped.
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isDead
boolean isDead()Deprecated.Returns true if no match will come from this IState.- Returns:
- true if no match will come from this IState
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nextState
Deprecated.Returns a state in which the atoms in match have been added to the current mapping.- Parameters:
match
- the match to consider.- Returns:
- a state in which the atoms in match have been added to the current mapping.
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backTrack
void backTrack()Deprecated.Returns this IState's atom map to its original condition.
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