Package org.openscience.cdk.smsd.algorithm.vflib.builder

Class NodeBuilder

java.lang.Object

org.openscience.cdk.smsd.algorithm.vflib.builder.NodeBuilder

All Implemented Interfaces:

INode

@Deprecated
public class NodeBuilder
extends Object
implements INode

Deprecated.

SMSD has been deprecated from the CDK with a newer, more recent version of SMSD is available at http://github.com/asad/smsd.

Class for building/storing nodes (atoms) in the graph with atom query capabilities.

Author:

Syed Asad Rahman <asad@ebi.ac.uk>

Source code:

main

Belongs to CDK module:

smsd

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	NodeBuilder(VFAtomMatcher matcher)	Deprecated. Construct a node for a query atom

Method Summary

Modifier and Type	Method	Description
void	addEdge(EdgeBuilder edge)	Deprecated. Adds edge to the edge list.
void	addNeighbor(NodeBuilder node)	Deprecated. Adds neighbor to the Neighbors List.
int	countNeighbors()	Deprecated. Returns Neighbors count.
VFAtomMatcher	getAtomMatcher()	Deprecated. Returns Query Atom.
List<IEdge>	getEdges()	Deprecated. Returns List of Edges.
Iterable<INode>	neighbors()	Deprecated. Returns neighbors.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NodeBuilder

protected NodeBuilder(VFAtomMatcher matcher)

Deprecated.

Construct a node for a query atom

Parameters:

matcher -

Method Detail

countNeighbors

public int countNeighbors()

Deprecated.

Returns Neighbors count.

Specified by:

countNeighbors in interface INode

Returns:

Neighbors count.

neighbors

public Iterable<INode> neighbors()

Deprecated.

Returns neighbors.

Specified by:

neighbors in interface INode

Returns:

Iterable INode.

getAtomMatcher

public VFAtomMatcher getAtomMatcher()

Deprecated.

Returns Query Atom.

Specified by:

getAtomMatcher in interface INode

Returns:

Query Atom.

getEdges

public List<IEdge> getEdges()

Deprecated.

Returns List of Edges.

Specified by:

getEdges in interface INode

Returns:

edges.

addEdge

public void addEdge(EdgeBuilder edge)

Deprecated.

Adds edge to the edge list.

Specified by:

addEdge in interface INode

Parameters:

edge - add an edge.

addNeighbor

public void addNeighbor(NodeBuilder node)

Deprecated.

Adds neighbor to the Neighbors List.

Specified by:

addNeighbor in interface INode

Parameters:

node - add a node.