Package org.openscience.cdk.renderer.selection

Class AtomBondSelection

java.lang.Object

org.openscience.cdk.renderer.selection.AtomBondSelection

All Implemented Interfaces:

IChemObjectSelection

public class AtomBondSelection
extends Object
implements IChemObjectSelection

A simple implementation of an IChemObjectSelection which wraps a HashSet. This selection only allows select

Constructor Summary

Constructors

Constructor	Description
AtomBondSelection()

Method Summary

Modifier and Type	Method	Description
boolean	contains(IChemObject obj)	Determines if the IChemObject is part of the current selection.
<E extends IChemObject> Collection<E>	elements(Class<E> cls)	Returns a Collection of all selected IChemObjects of the given type.
IAtomContainer	getConnectedAtomContainer()	Make an IAtomContainer where all the bonds only have atoms that are in the selection.
boolean	isFilled()	The opposite of a method like "isEmpty".
void	remove(IChemObject obj)	Deselect the chemobject in this selection.
void	select(IChemModel chemModel)	Perform a selection by some method.
void	select(IChemObject obj)	Select the chemobject in this selection.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AtomBondSelection

public AtomBondSelection()

Method Details

select

public void select(IChemObject obj)

Select the chemobject in this selection.

Parameters:

obj - the chemobject

remove

public void remove(IChemObject obj)

Deselect the chemobject in this selection.

Parameters:

obj - the chemobject

select

public void select(IChemModel chemModel)

Perform a selection by some method. This is used for selecting outside the hub, for example: IChemModel model = createModelBySomeMethod(); selection.select(model); renderModel.setSelection(selection);

Specified by:

select in interface IChemObjectSelection

Parameters:

chemModel - an IChemModel to select from.

getConnectedAtomContainer

public IAtomContainer getConnectedAtomContainer()

Make an IAtomContainer where all the bonds only have atoms that are in the selection.

Specified by:

getConnectedAtomContainer in interface IChemObjectSelection

Returns:

a well defined atom container.

isFilled

public boolean isFilled()

The opposite of a method like "isEmpty".

Specified by:

isFilled in interface IChemObjectSelection

Returns:

true if there is anything in the selection

contains

public boolean contains(IChemObject obj)

Determines if the IChemObject is part of the current selection.

Specified by:

contains in interface IChemObjectSelection

Parameters:

obj - IChemObject which might be part of the selection

Returns:

true, if the given obj is part of the selection

elements

public <E extends IChemObject> Collection<E> elements(Class<E> cls)

Returns a Collection of all selected IChemObjects of the given type.

Specified by:

elements in interface IChemObjectSelection

Parameters:

cls - type of IChemObjects that should be returned.

Returns:

a Collection of IChemObject of the given type